AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cien5g03337 | ATGGGGGATCGATTAAGGTCAGCCACGTTAGATGACTTGCCTTCGCATTTGATTTTTGAAATCTTGACATCCGGGGCCCAATTGGGCGGTGTGGATCTCGCCTGTTTGGAGCTAACTAACACAACTTTTCGAGGTAGCCATGGATTAGTCCCTCACAATTTAAGGTCTTTGGTTGACTTTGCAGCTTTTCAGCTTTGTGGGTCACATTCTATATACGTTTCCTTGAGTAACAGAGCTCAAGAAGAGCTCTTAGCTCGATGCGGCGGTAACTGGAAAAGGGTTTTGAGGTTCTTGCAATCAGTCAACCAGTCTTCCGACATCGTTGAGACCTCTTCCGGCAATATGCAAATTAGGAGCGGAAGGTATCACACATTACTGATAAAAGATTCAACAGTTTACTCATGTGGTTCAAGTTTATGTGGTGTTCTTGGTCATGGTCCCGAAACAACGCAATGTGTCGCATTCACTCCGATCAAATTCCCATATCCCGCCTACGTAACGGACGTTTCCGCCTCCCATAATCATGCTGCCTTCGTGACAAAATTGGGCGAGGTGTTCACATGTGGTGATAATTCGTCGTTTTGTTGTGGACATAGCGATACAAACCGGCCAATATTCAAGCCTAGACTCGTTGAAGCACTGAAAGAAGTTCCATGCAAGCAGGTTGCCGCCGGTGTTAGCTTCACCGTGTTTCTCACAAAAGAAGGTCAAGTATACACATGTGGGACCAGTGGACACGGTCAACTCGGCCATGGTGACACCCTGGACAGACCGTCACCAAAACTTGTCGAATCACTTGGAGCCATCGGTCCGGTGGTTCAGATAGCCGCCGGTCCAAGTTATACACTTGCGGTTACTAACGATGGAACCGTTTACTCATTTGGGTCTGGTTCCAATTTCTGTCTCGGCCATGGCGAACAACACAATGAACTCCGCCCTAGGCCACTCCTATCTTTCCGGCGGAAAGGAATCCATATTGTTCGCGTTTCCGCTGGCGATGAACATGTGGTCGCACTCGATTCCAACGGATTCGTTTACACATGGGGAAAAGGCTACTGTGGTGCACTTGGACATGGTGATGAAATCGATAAAACCACACCGGAACTTCTAAACAGCCTCAAGAATCATCTTGCTGTACAGGTGTGTGCGAGCAAGCGGAAGACGTTTGTGTTGGTGGATAATGGGTGTTTATATGGATTTGGATGGATGGGATTTGGGAGTTTAGGGTTTCCAGATAGGGGTGTATCGGATAAAGTGTTGAAGCCTAGTATGCTTTATAGTTTAAAGGATCATCATATTTGTCAAGTGAGCACTGGTTTGTATCATTCGGTTGTGGTTACGAATCGAGGCAGGATATTTGGATTTGGGGACAATGAAAGGGCGCAACTTGCACATGATAAATTAAGGGATTGTCTCCACCCGACTGAAATCTTGGTTGAAGAAGGAAGTGAAAATGGTGGATTTTGTTTGTAA | 1473 | 46.37 | MGDRLRSATLDDLPSHLIFEILTSGAQLGGVDLACLELTNTTFRGSHGLVPHNLRSLVDFAAFQLCGSHSIYVSLSNRAQEELLARCGGNWKRVLRFLQSVNQSSDIVETSSGNMQIRSGRYHTLLIKDSTVYSCGSSLCGVLGHGPETTQCVAFTPIKFPYPAYVTDVSASHNHAAFVTKLGEVFTCGDNSSFCCGHSDTNRPIFKPRLVEALKEVPCKQVAAGVSFTVFLTKEGQVYTCGTSGHGQLGHGDTLDRPSPKLVESLGAIGPVVQIAAGPSYTLAVTNDGTVYSFGSGSNFCLGHGEQHNELRPRPLLSFRRKGIHIVRVSAGDEHVVALDSNGFVYTWGKGYCGALGHGDEIDKTTPELLNSLKNHLAVQVCASKRKTFVLVDNGCLYGFGWMGFGSLGFPDRGVSDKVLKPSMLYSLKDHHICQVSTGLYHSVVVTNRGRIFGFGDNERAQLAHDKLRDCLHPTEILVEEGSENGGFCL | 490 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cien5g03337 | 490 | PANTHER | UBIQUITIN-PROTEIN LIGASE E3A-RELATED | 379 | 476 | IPR051709 | - | |
| Cien5g03337 | 490 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 436 | 446 | IPR000408 | - | |
| Cien5g03337 | 490 | Gene3D | - | 269 | 486 | IPR009091 | - | |
| Cien5g03337 | 490 | Gene3D | - | 97 | 268 | IPR009091 | - | |
| Cien5g03337 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 433 | 462 | - | - | |
| Cien5g03337 | 490 | SUPERFAMILY | RCC1-BLIP-II | 420 | 477 | IPR009091 | - | |
| Cien5g03337 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 236 | 288 | IPR000408 | - | |
| Cien5g03337 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 183 | 235 | IPR000408 | - | |
| Cien5g03337 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 235 | 285 | IPR000408 | - | |
| Cien5g03337 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 183 | 232 | IPR000408 | - | |
| Cien5g03337 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 288 | 339 | IPR000408 | - | |
| Cien5g03337 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 342 | 391 | IPR000408 | - | |
| Cien5g03337 | 490 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 131 | 179 | IPR000408 | - | |
| Cien5g03337 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 395 | 449 | IPR000408 | - | |
| Cien5g03337 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 343 | 394 | IPR000408 | - | |
| Cien5g03337 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 436 | 452 | IPR000408 | - | |
| Cien5g03337 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 290 | 306 | IPR000408 | - | |
| Cien5g03337 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 345 | 361 | IPR000408 | - | |
| Cien5g03337 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 326 | 339 | IPR000408 | - | |
| Cien5g03337 | 490 | PRINTS | Chromosome condensation regulator RCC1 signature | 452 | 466 | IPR000408 | - | |
| Cien5g03337 | 490 | SUPERFAMILY | RCC1-BLIP-II | 110 | 413 | IPR009091 | - | |
| Cien5g03337 | 490 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 289 | 342 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cien5g03337 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cien | Cien-Chr5:79030868 | Cien8g00060 | Cien-Chr8:1536626 | dispersed | |
| Cien | Cien-Chr5:79030868 | Cien2g04000 | Cien-Chr2:89599466 | transposed |