AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03355 ATGTTAAATGCTGTGCACACTGCAAAGAAGAACGGAAGAAAGAAAACTAAAGCGAAAGCCGTCGCAATCGACAAACTATTCTCTGTGGATCTGAAAACGAATTTCGCGTTACATTCTACTAAATTATTCTGTGCTTGTAGAAGAGACTGGACACAGATCTATGCAATATATGGCATGGACGATTGGCACACACCGATTTTTCTGTTGATCCACGCGATTGTCTTTTCTGCCTCGTCGGTGGTATTCCTTCTATACTTCAACTGGATCTGCTACTCCTTCGAATCAATCTTCCCGTCAGTATTTTCAGGCAGTTTCGCCAGATTCGCCGCAGGATTCACCGGCTCCGTCACGGCTCTCTCTGCCGTCTGTCTCTTCTACGCCGCCGGCAACATGTTCTACTCCTCTGTCGCCCTCCGGTGGGACATGGCCCAGCGAATGGTCAGCGCCGTCCACGACTGGTCCACCGTGAAAACCGTACTCGACGTCGGCTGCGGTCGCGGCATCCTCCTCAACACCGTCGCAATGCAGCTCAAAAAAGAAGGTAGCTCAGGCCGAGTCGTCGGGTTAGACCGTAAGAACACGACCTTGTCAACGCTTAGGACAGCAGGAATGGAAGGCGTACAGGAGTACGTCACCTGCCGTGAAGGAGACGCTCGTCGGCTACCATTTCCGGACAACTACTTCGACGTTGTAGTGTCGGCGGGTTTTGTTCACAAAGTAGGGAAGGAGTTCGGGTCGAAAACAGCGGCGGCATCGGCGGAGAGGATGCGAGTGGTGGGGGAGGTGGTGAGGGTCATGAAGGAGGGCGGAGTAGGGGTGGTTTGGGACCTGGTTCACGTACCGGAGTATGTTCTCCGGCTGCAAGAACTAAAAATGGAGGAGATCAGAGTATCGGAGAGGGTAACGGCGTTCATGGTGAACAGCCACATCGTGTCGTTCCGGAAACCCAGCCATGAACACGTGATGGGTCCCAATGAAGTGAGATTGGATTGGAGATTCAACAATATCTGTTGA 1014 52.27 MLNAVHTAKKNGRKKTKAKAVAIDKLFSVDLKTNFALHSTKLFCACRRDWTQIYAIYGMDDWHTPIFLLIHAIVFSASSVVFLLYFNWICYSFESIFPSVFSGSFARFAAGFTGSVTALSAVCLFYAAGNMFYSSVALRWDMAQRMVSAVHDWSTVKTVLDVGCGRGILLNTVAMQLKKEGSSGRVVGLDRKNTTLSTLRTAGMEGVQEYVTCREGDARRLPFPDNYFDVVVSAGFVHKVGKEFGSKTAAASAERMRVVGEVVRVMKEGGVGVVWDLVHVPEYVLRLQELKMEEIRVSERVTAFMVNSHIVSFRKPSHEHVMGPNEVRLDWRFNNIC 337
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03355 337 CDD AdoMet-MTases 158 278 - -
Cien5g03355 337 PANTHER EXPRESSED PROTEIN 47 332 - -
Cien5g03355 337 Pfam Methyltransferase domain 160 272 IPR013216 GO:0008757(InterPro)
Cien5g03355 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 314 IPR029063 -
Cien5g03355 337 Gene3D Vaccinia Virus protein VP39 126 302 IPR029063 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03355 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
64339 Cien1g02795 Cien5g03355
66554 Cien5g03355 Cien6g00095
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr1:10796808 Cien5g03355 Cien-Chr5:79308108 dispersed
Cien Cien-Chr2:60324931 Cien5g03355 Cien-Chr5:79308108 transposed
Cien Cien-Chr5:7475958 Cien5g03355 Cien-Chr5:79308108 transposed
Cien Cien-Chr5:79308108 Cien6g00095 Cien-Chr6:1365607 wgd