AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03356 ATGGAGGGCATTGATGCTAACGACAAGTACGCTAAAGAATTAGAAGTAGGCGTTAGAGTTGTACAGCTTGCTTGTTATCTATGCCAAAAGGTGCAAAAGGGTTCGATTGGTCCGACCCCTGATCAGGTCTTCTCCAAAGATGACGATTCACCAGTTACCGTCGCCGATTGGAGTGTACAAGCAATGATTAGCTGGATTCTATCAGAATCATTCGGTAAACAAAATGTCTCAATTGTAGCTGAAGAAGACACACAAACACTATCCGATTCAAACAGCTCCCACTTACTATCATCTGTTATTTCAACCGTGAACGATAGTTTAGCCATGGCACCCCGGTTCGGTCTCAAGGGTCCAACCGCACCCCTCGGGCCCACACAAGTTCTTGAAGCCATTAACCACTGCAATTCAACCGGTGGTCCAATGGGAAAACACTGGGTCCTTGACCCTGTTGACGGGACATTAGGGTTCGTTCGTGGTGACCAGTACGCTGTTGCTCTTGCTTTGATTGAAAACGGGCAGGTTGTGGTCGGTGTTCTTGGCTGCCCGAATTATTCGAGTAAGAAGAAATTGGTGAATAATAGTGTGAGTAAATCGGATTTGTGGCAAGAAGGGTGTGTGATGTATGCGAGAAAAGGTAGCGGTGAAGCTTGGATGCAGCCATTGGTAAACGGTGGTGGGTGGCCCAATTCAGCTAGCCGGATTCGGGTTTCTTCAATTGATGATCCTTCAATGGCTACGTTTTGTGAACCGGTTGAAAAAGCTAACTCTAACCATTCTTATAGTGCGGGAATTGCTTACAGTTTAGGGCTTCGAAAGAAACCATTGCGGGTGTATAGCATGGTAAAATACGCAGCAATTGCACGTGGAGATGCAGAAATATATATGAAATTTGCAAAAGCCGGATATAAAGAAAAGATATGGGACCATGCTGCCGGGGTGGTGATAGTGGAAGAAGCCGGCGGTGTTGTGACGGATGCTGGTGGCCGGCCGCTTGATTTTTCAAGAGGGGTGTATCTTGAAGGGCTTGACCGGGGAATTGTTATTTGTTCAGGGGTGAATTTGCATGATAAAATTATAGGGGCTGTTTATGCAAGTTGGGATTCTTCTCATCTATAG 1116 46.06 MEGIDANDKYAKELEVGVRVVQLACYLCQKVQKGSIGPTPDQVFSKDDDSPVTVADWSVQAMISWILSESFGKQNVSIVAEEDTQTLSDSNSSHLLSSVISTVNDSLAMAPRFGLKGPTAPLGPTQVLEAINHCNSTGGPMGKHWVLDPVDGTLGFVRGDQYAVALALIENGQVVVGVLGCPNYSSKKKLVNNSVSKSDLWQEGCVMYARKGSGEAWMQPLVNGGGWPNSASRIRVSSIDDPSMATFCEPVEKANSNHSYSAGIAYSLGLRKKPLRVYSMVKYAAIARGDAEIYMKFAKAGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSRGVYLEGLDRGIVICSGVNLHDKIIGAVYASWDSSHL 371
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03356 371 ProSitePatterns Inositol monophosphatase family signature 2. 307 321 IPR020550 GO:0046854(InterPro)
Cien5g03356 371 FunFam PAP-specific phosphatase HAL2-like 235 368 - -
Cien5g03356 371 ProSitePatterns Inositol monophosphatase family signature 1. 145 158 IPR020583 -
Cien5g03356 371 PANTHER PHOSPHATASE 6 367 IPR051090 GO:0000103(PANTHER)|GO:0008441(PANTHER)|GO:0042578(PANTHER)
Cien5g03356 371 SUPERFAMILY Carbohydrate phosphatase 10 364 - -
Cien5g03356 371 Pfam Inositol monophosphatase family 48 362 IPR000760 -
Cien5g03356 371 Gene3D - 235 365 - -
Cien5g03356 371 CDD PAP-phosphatase 13 364 - -
Cien5g03356 371 Gene3D - 9 224 - -
Cien5g03356 371 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 10 369 IPR006239 GO:0006790(InterPro)|GO:0008441(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03356 K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:79324355 Cien8g02156 Cien-Chr8:41606766 dispersed
Cien Cien-Chr6:79076426 Cien5g03356 Cien-Chr5:79324355 transposed
Cien Cien-Chr5:79324355 Cien8g01244 Cien-Chr8:19850016 wgd