AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03361 ATGTGGAAACTTGTCGACAGTCGACTCCCTTCTTTGGTGGTGGCGTCGCATATTGAGATCCCACATCGAGATCTGCGCTTTCTTTCACCAATCAATTGTATAAATGGCCCCACATATCATATGACTCACTTTTCCTCTTCGTCTCGGATTCACCTTACAGGTCTACTTTCATTGAAGAACTGTAAGATGACGCATAAACAGGAGACTTTGATAGGTTCTGGAGCTTGTGTAGCACTTACAGTCCTCTTAGCATTGAAATTAGTTCGCGATCATCTTTCTAATTGGAAGAAGCCTAAGGAACAAAAGGCGATCATAGTCATAATCCTCATGGCCCCGATCTACGCTGTTGACTCATACGTCGGATTGCTTGATATTCGTGGCAGCGAGACCTTCTTTGTGTTCCTTGACTCCATCAAAGAATGCTACGAGGGTCTGGTGATGGCCAAGTTCTTGGCTTTGCTTTACACTTATTTGAATATATCCATAAGCAAGAACATAGTTCCAGATGAGATCAAAGGAAGAGAAATTCATCACTCATTCCCAATGACTCTCTTCCAACCTCATTCAGTTCGTTTGAACCATCAAAACTTGAAGCTATTGAAATATTGGACATGGCAGTTTGTAGTGATTCGCCCTGTTTGTTCTGTTTTAATGATAGTCCTTCAACTTCTTGAGATATATCCTGATTGGCTGAGCTGGACATTTACTATGATCTTGAATGTTTCGGTTTCCTTAGCCTTATATGCCCTTGTGGTTTTCTACCATGTATTTGCTAAAGAATTGGCCCCACATAAACCTCTTGCCAAGTTCTTATGTGTCAAAGGGATCGTCTTCTTTTGCTTTTGGCAGGGAATTGTACTTAGTGGTCTAGTGGCAATGGGCGTAATTAAATCGAATCATTTTTGGCTTGATGTGGCGCATATCCAGCAAGCTCTTCAAAATGCGTTGGTAATTGTGGAGATGGTGTTTTTTGCAATGTTTCAGATGTATGCATACACTGCTGCACCATACAAGGTCGATCATTTGAAAGAAAAGAAGAAAGAGTGA 1047 41.26 MWKLVDSRLPSLVVASHIEIPHRDLRFLSPINCINGPTYHMTHFSSSSRIHLTGLLSLKNCKMTHKQETLIGSGACVALTVLLALKLVRDHLSNWKKPKEQKAIIVIILMAPIYAVDSYVGLLDIRGSETFFVFLDSIKECYEGLVMAKFLALLYTYLNISISKNIVPDEIKGREIHHSFPMTLFQPHSVRLNHQNLKLLKYWTWQFVVIRPVCSVLMIVLQLLEIYPDWLSWTFTMILNVSVSLALYALVVFYHVFAKELAPHKPLAKFLCVKGIVFFCFWQGIVLSGLVAMGVIKSNHFWLDVAHIQQALQNALVIVEMVFFAMFQMYAYTAAPYKVDHLKEKKKE 348
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03361 348 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 69 340 IPR005178 GO:0005215(PANTHER)|GO:0006810(PANTHER)|GO:0016021(PANTHER)
Cien5g03361 348 SMART Solute-trans-a-2 69 337 IPR005178 -
Cien5g03361 348 Pfam Organic solute transporter Ostalpha 70 337 IPR005178 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03361 K14360 organic solute transporter subunit alpha
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr3:14313813 Cien5g03361 Cien-Chr5:79356249 transposed
Cien Cien-Chr4:85338213 Cien5g03361 Cien-Chr5:79356249 transposed
Cien Cien-Chr6:13261640 Cien5g03361 Cien-Chr5:79356249 transposed
Cien Cien-Chr8:25068834 Cien5g03361 Cien-Chr5:79356249 transposed
Cien Cien-Chr4:2091505 Cien5g03361 Cien-Chr5:79356249 wgd