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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03368 ATGGCTAGCAGGAATGAACCTTCTGATGCTTACACTGAACCCACTGATGAAGAAGAAGAAATGTACAACAAGATCCTTCACGGCATATGCAGTCCACGTGGGAGAGCACGAAATGACCAAAGATCTCCATGGGTCCAAGAATGGAACCAGGTTTTCCTACTGGTGTGTGCGATGGGTCTGTTCGTAGACCCGCTCTTCTTCTACACTCTGTCCATAAGCGAGTCGTGCATGTGCGTGTACGTCGATGGGAGGTTGGCCGTCACAGTGACGGTGCTCCGGTGCATGACGGACGCGTTGCACGTGTGGCATATGTGGTTGCAGTTCAAGATGAAAAGATCATCTCCAGCGTACCAACGCCAGTTGAACACCGATGAGATGACGGTACGGAAAGTGGTGATGCGGTTGATGACGGAAGCCAAGAACCGGTTCTCACTTGATATCTTCGTCATCCTACCAATTTCCCAGGTAGTATTATGGGTGGTCATTCCGACATTGCTGGAAAAAGGTTCAACGACCTTTGTGATGACGGTTTTCCTAATTATGTTTCTCTTCCAATACCTACCAAAGATCTATCATTTTGTCCGCCTTTTACGCCGCATGCAAAGTCTCTCGGGCTACATTTTCGGTACAGTTTGGTGGGGAGTTGCTTTCAACATGATCGCCTATTTTGTTGCCTCTCATGCTGTGGGTGCTTGTTGGTACTTGCTTGGAACTCAGAGGGTTGCTAGATGCTTGATGGAGAAATGTATGGAAACAAATAGATGCACACCAAGAGTATTAACATGTGAAGAGGTCATGTATTACGGAACAAACAGACTGGCGGGAGACATGTCCAGACTTTTATGGGGTGAGAACAGAAGTGCAAGGTCTACTTGCTTACAAGATAACAATGGTTTTACTTTTGGAGCTTATAAATGGACAGTTCAACTCGTTAGCAACGAGAGCAGATTGGAGAAGATACTCTTGCCCATATTTTGGGGTCTGATGACACTCAGTACATTTGGTAATTTGGAGAGTGCAACTGATTCGTTGGAAGTGGTTTTTACCGTCGTCGTTCTGACGACCGGGCTCCTTTTGGTCACCATGTTGATAGGAAACATTAAGGTGTTTTTTGATGCAACGACGTCTAAGAAACAAGCAATGCAGTTGAAAATGAGAGACATTGAGTGGTGGATGAGGAGGAGAAACCTCCCTCAAGGATTTAGACAAAGAGTTAGAAATTACGAGCGACAAAATTGGGCAGCTATGCGGGGAGTCGATGAGAGTGAGATGATCTGCAACTTGCCAGAGGGCCTGCGAAAGGACATCAAGTACCATCTCTGCTTGGATTTGGTTCGACAGGTACCCTTATTTCAACATATGAACAACTTAGTCCTCGAGAACATATGTGACCGTGTTAGACCACTTATTTTCACCAAAGGAGAAATAATTACTCGAGAGGGAGATCCGGTACAAAGGATGTTATTTATAGTACGAGGACATCTTCAAAGTAGCCAATGTCTACGAGAGGGTGTCAAAAGTTGTTGCATGTTAGGCCCTGGAAACTTCAGTGGGGACGAACTCTTGTCATGGTGTCTAAAGAGACCTTTCATTGAAAGATTACCTCCATCGTCATCGACACTAGTCACACTTGAGACCACAGAAGCTTTTGAGCTACATTCTGAAGATGTGAAGTATGTTACACAACATTTTAGGTACACATTTGTGAATGAAAAAGTGAAGATGAGTGCAAGATATTATTCACCAGGATGGAGGACTTGGGCAGCTGTTGCGATTCAATTGGCTTGGAGAAGGTACAAGCACATGCTTACACTCAACTTGTTGTCGTTTATTAGACCAAGGAATCCTTTGTCGAGGTGTTCTTCACTTGGGGAAGATAGGGTAAGACTTTATACGGCTCTCTTGACTTCGCCAAAGCCCAATCAAGATGATTTCGACTTTTAA 1944 44.75 MASRNEPSDAYTEPTDEEEEMYNKILHGICSPRGRARNDQRSPWVQEWNQVFLLVCAMGLFVDPLFFYTLSISESCMCVYVDGRLAVTVTVLRCMTDALHVWHMWLQFKMKRSSPAYQRQLNTDEMTVRKVVMRLMTEAKNRFSLDIFVILPISQVVLWVVIPTLLEKGSTTFVMTVFLIMFLFQYLPKIYHFVRLLRRMQSLSGYIFGTVWWGVAFNMIAYFVASHAVGACWYLLGTQRVARCLMEKCMETNRCTPRVLTCEEVMYYGTNRLAGDMSRLLWGENRSARSTCLQDNNGFTFGAYKWTVQLVSNESRLEKILLPIFWGLMTLSTFGNLESATDSLEVVFTVVVLTTGLLLVTMLIGNIKVFFDATTSKKQAMQLKMRDIEWWMRRRNLPQGFRQRVRNYERQNWAAMRGVDESEMICNLPEGLRKDIKYHLCLDLVRQVPLFQHMNNLVLENICDRVRPLIFTKGEIITREGDPVQRMLFIVRGHLQSSQCLREGVKSCCMLGPGNFSGDELLSWCLKRPFIERLPPSSSTLVTLETTEAFELHSEDVKYVTQHFRYTFVNEKVKMSARYYSPGWRTWAAVAIQLAWRRYKHMLTLNLLSFIRPRNPLSRCSSLGEDRVRLYTALLTSPKPNQDDFDF 647
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03368 647 Gene3D Jelly Rolls 448 566 IPR014710 -
Cien5g03368 647 Gene3D Helix hairpin bin 375 441 - -
Cien5g03368 647 ProSiteProfiles cAMP-cGMP binding motif profile. 450 529 IPR000595 -
Cien5g03368 647 FunFam cyclic nucleotide-gated ion channel 4 448 566 - -
Cien5g03368 647 SUPERFAMILY cAMP-binding domain-like 376 564 IPR018490 -
Cien5g03368 647 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 38 601 - -
Cien5g03368 647 SUPERFAMILY Voltage-gated potassium channels 41 371 - -
Cien5g03368 647 CDD CAP-ED 450 556 IPR000595 -
Cien5g03368 647 Pfam Cyclic nucleotide-binding domain 471 559 IPR000595 -
Cien5g03368 647 FunFam Cyclic nucleotide-gated ion channel 1 377 441 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03368 K05391 cyclic nucleotide gated channel, plant
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Event-related genes

Select Gene_1 Gene_2 Event_name
66556 Cien5g03368 Cien9g02194
66557 Cien5g03368 Cien9g02195
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:79439001 Cien9g02195 Cien-Chr9:44721986 dispersed
Cien Cien-Chr5:79439001 Cien9g02194 Cien-Chr9:44717273 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cien9g00471 . 19 861 Ion Channels gene family AT2G29120 33.564 1.01e-151 470.0
Cien9g00472 . 19 846 Ion Channels gene family AT2G29120 33.294 6.56e-150 466.0
Cien9g00560 . 1 677 Ion Channels gene family AT5G46240 56.894 0.0 822.0
Cien9g01131 ACH 525 713 Ion Channels gene family AT5G37500 30.052 6.33e-12 67.0
Cien9g01215 . 1 717 Ion Channels gene family AT5G57940 74.966 0.0 1110.0
Cien9g01287 ACH 569 891 Ion Channels gene family AT2G17260 35.347 4.62e-55 191.0
Cien9g01289 . 496 873 Ion Channels gene family AT2G17260 36.01 1.09e-60 213.0
Cien9g01672 . 1 791 Ion Channels gene family AT5G26240 81.149 0.0 1233.0
Cien9g01954 . 63 355 Ion Channels gene family AT5G55630 54.608 4.94e-109 322.0
Cien9g01958 ACH 46 358 Ion Channels gene family AT5G55630 52.396 1.96e-111 328.0
Cien9g02194 ACH 87 692 Ion Channels gene family AT5G54250 76.112 0.0 956.0
Cien9g02195 ACH 80 692 Ion Channels gene family AT5G54250 77.184 0.0 996.0
Cien9g02623 ACH 19 726 Ion Channels gene family AT5G15410 73.249 0.0 1015.0
Cien9g02673 ACH 4 779 Ion Channels gene family AT5G49890 76.546 0.0 1184.0
Cien8g00424 . 154 201 Ion Channels gene family AT5G53130 77.083 6.81e-19 81.3
Cien8g00518 . 17 187 Ion Channels gene family AT4G18160 32.203 9.73e-13 63.2
Cien8g00633 . 184 715 Ion Channels gene family AT5G53130 60.444 0.0 659.0
Cien8g00635 . 411 715 Ion Channels gene family AT5G53130 60.912 3.10e-127 379.0
Cien8g00647 ACH 132 258 Ion Channels gene family AT5G33280 37.795 3.99e-15 75.5
Cien8g00795 . 178 288 Ion Channels gene family AT4G22200 61.062 9.38e-41 142.0
Cien8g01461 . 1 725 Ion Channels gene family AT4G03560 65.068 0.0 994.0
Cien8g01510 ACH 1 719 Ion Channels gene family AT4G03560 66.85 0.0 1008.0
Cien8g01656 . 30 900 Ion Channels gene family AT4G35290 62.572 0.0 1121.0
Cien8g03269 . 331 699 Ion Channels gene family AT5G14870 72.149 0.0 555.0
Cien8g03385 ACH 1 775 Ion Channels gene family AT5G40890 76.834 0.0 1206.0
Cien7g01444 . 123 191 Ion Channels gene family AT4G03560 47.826 2.03e-16 73.2
Cien7g02522 ACH 546 727 Ion Channels gene family AT4G32500 26.316 6.96e-10 60.8
Cien7g02531 . 154 200 Ion Channels gene family AT5G53130 72.34 4.06e-17 74.7
Cien6g00487 . 236 848 Ion Channels gene family AT2G29100 31.68 9.24e-91 304.0
Cien6g00670 . 412 623 Ion Channels gene family AT5G40890 72.642 2.62e-96 295.0
Cien6g01299 . 463 729 Ion Channels gene family AT4G30560 61.232 3.96e-110 333.0
Cien6g01301 . 510 707 Ion Channels gene family AT4G30560 57.576 1.75e-66 216.0
Cien6g01316 . 469 656 Ion Channels gene family AT1G19780 59.898 2.74e-72 232.0
Cien6g01806 . 3 855 Ion Channels gene family AT2G26650 57.471 0.0 1004.0
Cien5g00017 . 53 404 Ion Channels gene family AT4G01840 58.611 9.75e-140 403.0
Cien5g01515 ACH 41 844 Ion Channels gene family AT5G48410 40.58 0.0 575.0
Cien5g01739 . 1 700 Ion Channels gene family AT5G14870 60.085 0.0 870.0
Cien5g02028 . 582 632 Ion Channels gene family AT4G03560 75.0 1.60e-20 83.2
Cien5g02332 . 457 623 Ion Channels gene family AT1G19780 58.084 1.35e-58 193.0
Cien5g02770 ACH 8 779 Ion Channels gene family AT5G49890 75.679 0.0 1147.0
Cien5g02825 ACH 47 726 Ion Channels gene family AT5G15410 70.785 0.0 949.0
Cien5g03093 ACH 56 932 Ion Channels gene family AT1G05200 64.334 0.0 1204.0
Cien5g03094 . 11 900 Ion Channels gene family AT2G32400 54.251 0.0 996.0
Cien5g03368 ACH 81 692 Ion Channels gene family AT5G54250 73.203 0.0 926.0
Cien4g00482 . 364 598 Ion Channels gene family AT3G27170 50.0 3.98e-61 205.0
Cien4g00795 . 15 430 Ion Channels gene family AT4G18160 62.945 3.42e-175 494.0
Cien4g00888 . 412 623 Ion Channels gene family AT5G40890 72.642 9.98e-97 296.0
Cien4g02454 . 10 728 Ion Channels gene family AT4G30560 64.564 0.0 961.0
Cien3g00035 ACH 7 855 Ion Channels gene family AT2G26650 67.312 0.0 1236.0
Cien3g00078 . 7 765 Ion Channels gene family AT5G33280 73.254 0.0 1112.0
Cien3g00089 ACH 505 713 Ion Channels gene family AT5G37500 30.374 1.42e-13 72.0
Cien3g00136 . 1 717 Ion Channels gene family AT5G57940 75.724 0.0 1128.0
Cien3g00188 . 1 719 Ion Channels gene family AT4G30360 67.935 0.0 1002.0
Cien3g00194 ACH 93 441 Ion Channels gene family AT2G24710 37.989 6.33e-66 232.0
Cien3g00336 . 411 587 Ion Channels gene family AT3G27170 75.141 1.02e-80 253.0
Cien3g01013 . 462 829 Ion Channels gene family AT3G07520 39.362 1.17e-79 260.0
Cien3g01014 ACH 512 816 Ion Channels gene family AT5G48410 41.424 6.18e-69 233.0
Cien3g01301 ACH 23 898 Ion Channels gene family AT3G51480 57.593 0.0 1089.0
Cien3g01303 . 11 88 Ion Channels gene family AT3G51480 48.78 1.61e-21 85.1
Cien3g01306 ACH 25 91 Ion Channels gene family AT1G42540 61.194 1.47e-22 90.5
Cien3g01307 . 17 91 Ion Channels gene family AT1G42540 56.0 6.03e-23 90.9
Cien3g01317 . 23 86 Ion Channels gene family AT3G51480 50.0 1.34e-17 75.1
Cien3g02026 . 74 733 Ion Channels gene family AT3G02850 65.455 0.0 930.0
Cien3g02028 . 449 587 Ion Channels gene family AT3G02850 55.396 3.00e-44 154.0
Cien3g02029 . 569 693 Ion Channels gene family AT5G37500 50.388 2.96e-40 140.0
Cien3g02293 . 602 726 Ion Channels gene family AT2G25600 31.111 3.40e-07 52.0
Cien2g00032 . 12 912 Ion Channels gene family AT1G42540 64.341 0.0 1213.0
Cien2g00328 . 396 592 Ion Channels gene family AT3G27170 75.758 1.81e-94 290.0
Cien2g00331 . 486 688 Ion Channels gene family AT5G40890 64.532 1.46e-78 248.0
Cien2g01172 ACH 515 903 Ion Channels gene family AT3G51480 61.44 2.17e-166 496.0
Cien2g01173 ACH 23 903 Ion Channels gene family AT3G51480 59.685 0.0 1118.0
Cien2g01523 . 1 716 Ion Channels gene family AT5G53130 75.208 0.0 1097.0
Cien2g02342 . 43 637 Ion Channels gene family AT2G28260 55.201 0.0 714.0
Cien2g02620 . 1 678 Ion Channels gene family AT2G28260 68.608 0.0 987.0
Cien2g02770 ACH 21 700 Ion Channels gene family AT3G27170 64.773 0.0 899.0
Cien2g02775 ACH 539 702 Ion Channels gene family AT5G37500 30.058 5.69e-09 57.8
Cien2g02959 . 54 726 Ion Channels gene family AT5G15410 56.342 0.0 742.0
Cien1g00551 . 548 715 Ion Channels gene family AT2G25600 34.911 4.09e-15 71.6
Cien1g00653 . 38 675 Ion Channels gene family AT2G28260 54.083 0.0 734.0
Cien1g00654 . 193 634 Ion Channels gene family AT2G28260 61.086 0.0 584.0
Cien1g01082 . 1 678 Ion Channels gene family AT2G28260 71.884 0.0 1022.0
Cien1g01995 . 3 717 Ion Channels gene family AT5G57940 74.069 0.0 1076.0
Cien1g02199 ACH 7 856 Ion Channels gene family AT2G26650 67.126 0.0 1211.0
Cien1g02407 . 486 617 Ion Channels gene family AT5G14870 75.0 2.86e-64 207.0
Cien1g02881 . 34 828 Ion Channels gene family AT2G24720 28.642 1.07e-103 340.0
Cien1g02882 . 53 878 Ion Channels gene family AT2G29120 30.523 3.41e-126 399.0
Cien1g02885 . 13 863 Ion Channels gene family AT5G27100 28.423 4.18e-105 343.0
Cien1g02886 . 1 849 Ion Channels gene family AT2G24710 28.313 4.36e-102 340.0
Cien1g02887 . 23 774 Ion Channels gene family AT5G11210 29.502 4.67e-103 334.0
Cien1g02949 ACH 56 932 Ion Channels gene family AT1G05200 65.232 0.0 1237.0