AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03373 ATGGCATTCAAAAGGAGCTTATTTTTTATCGTCTTCACAATAATTGTTGTTTCAGGTGCAATTACACAAGTGAAAGCTTACACATCTGCTTACTGCAATTCTGCGTCCCGTTGTCCATATCAATATATCACATGCCCATCTGAATGCCCCCAAAGCAGCTCCTACGACACCAAGGCTAAAGTTTGTCGCATTGATTGTTATTCTCCTAAATGCAAGGCCGAATGCAAACACAACAATAAACCAGACTGTGAAACACCGGGATCGGCATGCTACGACCCACGGTTCATAGGGGGAGACAGCATTGTGTTCTACTTTCACGGCAAGGTTGACCAGCATTTCAGCTTGGTCTCCGACTCTAACCTCCAAATCAACGGACGATTCATTGGCCACCAACCCACCGGCAGGTCAAGGCCCTTCACCTGGATCCAAGCCTTGGGTCTCCTCTTCAATTCCCACAGTTTCTCCTTAGAAGCTACTAAAAGCGCCACCTGGGATGGCGGTATCGACCACCTGAAATTCTCCTACGATGGAGAAGATGTTTTGTTGGGTCTCGGTGGTTTATCCTCATGGAAGTCGCTGGAGGGTGAAATCGAAGTGGAGAGAACTGCTGCGGTGAACAGCGTGATGGTGAACATACCTGGAGTTGTGGAGATTTTGGCAAATGTGGTGCCGGTGACAGCGGAAGATGACAAGATCCATGGCTACAAAGTGCCTTCTGATGACTGCTTTGCTCACTTGGAAGTGCAGTTTAAGTTTAGCGGACTTTCAGAAAGCGTCGAAGGGGTATTGGGGAGGACATATCAGCCGGATTTTAAGAACCCCGCGAAGCCAGGTGTGGCTATGGCGGTTGTGGGAGGAGAAGACAAGTATAGAACCACCTCTTTGTTGTCGTCTGATTGTGCAAAGTGCATCTATGATTCGAGTAACGAGAAGCAGATTATTAAGGAGCACGGAACATTGGATTGTTCAGCTAAGGGATTGTTCCATGGAAATGGAATCGTCTGCAAGAAATGA 1014 47.44 MAFKRSLFFIVFTIIVVSGAITQVKAYTSAYCNSASRCPYQYITCPSECPQSSSYDTKAKVCRIDCYSPKCKAECKHNNKPDCETPGSACYDPRFIGGDSIVFYFHGKVDQHFSLVSDSNLQINGRFIGHQPTGRSRPFTWIQALGLLFNSHSFSLEATKSATWDGGIDHLKFSYDGEDVLLGLGGLSSWKSLEGEIEVERTAAVNSVMVNIPGVVEILANVVPVTAEDDKIHGYKVPSDDCFAHLEVQFKFSGLSESVEGVLGRTYQPDFKNPAKPGVAMAVVGGEDKYRTTSLLSSDCAKCIYDSSNEKQIIKEHGTLDCSAKGLFHGNGIVCKK 337
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03373 337 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 26 337 - -
Cien5g03373 337 Pfam Root cap 249 305 IPR009646 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03373 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:79533210 Cien5g03375 Cien-Chr5:79577070 dispersed
Cien Cien-Chr5:79503678 Cien5g03373 Cien-Chr5:79533210 tandem
Cien Cien-Chr5:79533210 Cien5g03374 Cien-Chr5:79570041 tandem