AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03374 ATGGCATTCAAAAGGAGTTTATTTTTTATCGTCTTCGCAATAATTGTTGTTTCAGGTGCAATAACACAAGTGAAAGCTTATACATCCAGTTACTGCGGTCCTGCGTCCCGTTGTCCACATCAATATATCACATGCCCATCTGAATGCCCCGAAAGCAGCTCCTACGACACCAAGGCTAAAGTTTGTCGCATTGACTGTTATTCTCCTAAATGCAAGGCCGAATGCAAACACAACAATAAACCCGACTGTGACACACCGGGATCGGCATGCTACGACCCACGGTTCATAGGGGGAGACAGCATTGTGTTCTACTTCCACGGCAAGGTTGACCAGCATTTCAGCTTGGTCTCCGACTCTAACCTCCAAATCAACGGACGATTCATCGGCCACCAACCCACCGGCAGGTCAAGGCCCTTCACCTGGATCCAGGCCTTGGGTCTCCTCTTCAATTCCCACAGTTTCTCCCTAGAAGCCACTAAAAGCGCCACCTGGGATGGGGGTATCGACCATCTGAAATTCTCCTACGATGGAGAAGAAATTTTGTTGGGTCTCGGTGGTTTATCCTCATGGAAGTCGCCGGAGGGTGAAATCGAAGTGGAGAGAACTGCTGCGGTGAACAGCGTGATGGTGAACATACCTGGAGTGGTGGAGATTTTGGCAAATGTGGTGCCGGTGACAGCGGAAGATGACAAGATCCATGGCTACAAAGTGCCTTCTGATGACTGCTTTGCTCACTTGGAAGTGCAGTTTAAGTTTAGCGGACTTTCTGACGATGTCGAAGGGGTATTGGGGAGGACATATCAGCCGGATTTCAAGAACCCCGCGAAGCCAGGTGTGGCTATGGCGGTTGTGGGAGGAGAAGACAAGTATAGAACCACCTCTTTGTTTTCGTCTGATTGTTCAAAGTGCATCTATGATTCGAGTAACGAGAAGCAGATTATTAAGGAGCACGGAACATTGGATTGTTCATCTAAGGGACTGTTCCATGGAAATGGAATCGTCTGCAAGAAATGA 1014 48.42 MAFKRSLFFIVFAIIVVSGAITQVKAYTSSYCGPASRCPHQYITCPSECPESSSYDTKAKVCRIDCYSPKCKAECKHNNKPDCDTPGSACYDPRFIGGDSIVFYFHGKVDQHFSLVSDSNLQINGRFIGHQPTGRSRPFTWIQALGLLFNSHSFSLEATKSATWDGGIDHLKFSYDGEEILLGLGGLSSWKSPEGEIEVERTAAVNSVMVNIPGVVEILANVVPVTAEDDKIHGYKVPSDDCFAHLEVQFKFSGLSDDVEGVLGRTYQPDFKNPAKPGVAMAVVGGEDKYRTTSLFSSDCSKCIYDSSNEKQIIKEHGTLDCSSKGLFHGNGIVCKK 337
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03374 337 Pfam Root cap 249 305 IPR009646 -
Cien5g03374 337 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 29 337 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03374 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr3:89213135 Cien5g03374 Cien-Chr5:79570041 dispersed
Cien Cien-Chr5:79503678 Cien5g03374 Cien-Chr5:79570041 dispersed
Cien Cien-Chr5:79570041 Cien8g01245 Cien-Chr8:19868085 dispersed
Cien Cien-Chr5:79533210 Cien5g03374 Cien-Chr5:79570041 tandem
Cien Cien-Chr5:79570041 Cien5g03375 Cien-Chr5:79577070 tandem