AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03386 ATGCAACCCCAGAAAACCCTACCGGAATCTGACTTACCATCGCTCGCCGCCATCAAAGTCAAGTCGTCATCCCCTCGTTTCCGTCCTACGAATCCTTCTGCCACCGAAACCCCCACCGCCGGCGCGCAGCGCAAGATAGGCATCGCCGTCGATCTTAGTGACGAGAGCGCCTTTGCTGTGAAGTGGGCTGTCCACCAGTATCTCCGCCCCGGTGACGCCGTGATCCTCATCCACGTCCGTCCTACTTCCGTCCTTTACGGCGCTGATTGGGGCTCTGTTGATCTTTCCATCGTCGACACCGACAATGAGGAATCACAGCGGAAGCTCGAAGATGATTTCGATGCTTTCACCACTACGAAATCCGCTGCCCTAGCGCAACCTCTAGTCGACGCGCACATACCGTACAAGATCCATATCGTCAAAGACCACGATATGAAGGAGAGGCTGTGTTTGGAAGTCGAGAGGCTAGGGTTATGTGCTGTTATCATGGGAAGCCGAGGATTCGGTGCTACGAAACGCGGAAGCGATGGAAGGCTCGGGAGTGTTAGCGATTACTGCGTGCGCCACTGTGTATGCCCCGTGGTAGTTGTGAGATATCCCGATGAGAAAGATCCCTCTGCCACTGAGCCGATTGTTTCGGTGGCAAGAGCCGACGATGAAGAAGACGATCCTGAATTCCATGATGCAACCGATGAACGAAAATCTCGTGAATTAGAATCTAAACGTAGATGGATTGGTCTCTGTTTGAATCTTTCATTTAGAGGATGA 768 52.86 MQPQKTLPESDLPSLAAIKVKSSSPRFRPTNPSATETPTAGAQRKIGIAVDLSDESAFAVKWAVHQYLRPGDAVILIHVRPTSVLYGADWGSVDLSIVDTDNEESQRKLEDDFDAFTTTKSAALAQPLVDAHIPYKIHIVKDHDMKERLCLEVERLGLCAVIMGSRGFGATKRGSDGRLGSVSDYCVRHCVCPVVVVRYPDEKDPSATEPIVSVARADDEEDDPEFHDATDERKSRELESKRRWIGLCLNLSFRG 255
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03386 255 CDD USP-Like 45 197 - -
Cien5g03386 255 Pfam Universal stress protein family 44 198 IPR006016 -
Cien5g03386 255 PANTHER OS01G0783500 PROTEIN 8 234 IPR044162 -
Cien5g03386 255 MobiDBLite consensus disorder prediction 24 40 - -
Cien5g03386 255 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 44 202 - -
Cien5g03386 255 PRINTS Universal stress protein signature 176 198 IPR006015 -
Cien5g03386 255 PRINTS Universal stress protein signature 43 61 IPR006015 -
Cien5g03386 255 MobiDBLite consensus disorder prediction 1 41 - -
Cien5g03386 255 Gene3D HUPs 33 210 IPR014729 -
Cien5g03386 255 MobiDBLite consensus disorder prediction 203 239 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03386 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr3:32506877 Cien5g03386 Cien-Chr5:79734839 dispersed
Cien Cien-Chr5:73259843 Cien5g03386 Cien-Chr5:79734839 dispersed
Cien Cien-Chr5:79734839 Cien7g00077 Cien-Chr7:889475 dispersed
Cien Cien-Chr5:79734839 Cien8g01602 Cien-Chr8:24925951 transposed