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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03419 ATGGCGATTGTACGGCAGAAACACACACTACTTCTCATACTACTATGTGTAATTCTTCCCTTTTCTCATTCACAATCGGAATCGGAATCGGAATCAGTAACAGAATCTTCCATACACGATCTCCTCAAAAGCAAAGGCTTACCGGTTGGCCTGTTCCCGAAAGAAGTCGAATCATTCACTCTATACGACACAGGGCTTCTTGAAGTGTTCTTGAGAGGACCTTGTTTAACGAAATTCGATACGATGGCGTTTTACGAAAGCACAGTCAGAGCTAACCTTACTTACGGAAGCCTTACCAGCGTTGAAGGGTTATCTCAAGAAGAGCTTTTTCTCTGGTTGCCGGTGAAAGATATTATCGTCGACGATCCCAAATCTGGACTCATATTATTCGACATTGGCCTCGCTTACAAACAGCTGTCACTCTCACTTTTCGAAGATCCTCCTGATTGTAAAACCGAAGATATTTTGAATTTGAAGAATTTGAAGAAGAAATCTAGGAAGGAGATAGGATTTGATGCTCAAATGTAG 528 41.67 MAIVRQKHTLLLILLCVILPFSHSQSESESESVTESSIHDLLKSKGLPVGLFPKEVESFTLYDTGLLEVFLRGPCLTKFDTMAFYESTVRANLTYGSLTSVEGLSQEELFLWLPVKDIIVDDPKSGLILFDIGLAYKQLSLSLFEDPPDCKTEDILNLKNLKKKSRKEIGFDAQM 175
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03419 175 FunFam Uncharacterized protein At3g07460 22 154 - -
Cien5g03419 175 Pfam Protein of unknown function, DUF538 38 145 IPR007493 -
Cien5g03419 175 SUPERFAMILY At5g01610-like 8 152 IPR036758 -
Cien5g03419 175 PANTHER T31J12.3 PROTEIN-RELATED 27 151 IPR007493 -
Cien5g03419 175 Gene3D - 24 155 IPR036758 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03419 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1691622 Cien Cien4g01407 Cien-Chr4:63016725 Cien5g03419 Cien-Chr5:80188653
1707838 Cien Cien5g03419 Cien-Chr5:80188653 Cien3g01011 Cien-Chr3:20293443