AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03428 ATGAAAAATGCTCTTCACGATATAGAAACAACCCTAATGGCCCCAGATGATGACGTCACCATGTCCATGACCCGTACGGGTCGACCCGGGTCCGACCTAAACCACTTGCTTATCGCGTGCGCAAGTGCTTTAGCAAGCAACAAGCTTGATGAGTTCGATGAATTAGTCGAACAAGCAAGGGCATTTGTGTCAATTAGCGGCGACCCGATTCAACGACTAGGTGCGTATATAGTCGAAGGGTTGGTAGCAAGAAAGGAATCTTCCGGAAACAATATTTATCGGGCTTTGAAATGTAAAGAGCCGTTAGGAGAAGAATTACTTTCGTACATGCATATTCTCTACGAAATTTGCCCGTATTTGAAATTCGGGTACATGGCTGCAAACGGGGCGATAGCTGAAGCGGTTCGAACCGAAGACCGGATCCATATTATAGATTTCCAAATAGCCCAAGGCACCCAATGGATGACGCTTCTACAAGCCCTCGCGGCCCGCCCTGGCGGGCCCCCACACGTGCGTATCACCGGAATCGACGATCCCGTTTCCAGATACGCACGTGGCGAGACTTTGGAATTGGTCGGGAAACGGTTGGAGTTGGTTTCACAAAAGTTTAAAATCCCGATCGAGTTTCATCCGATTCAAGTATTCGCGCCGTTTGTGACTAAAGAAATGCTTGATATTCGGCCCGGGGAGGCCATTGCGGTCAATTTTGCCCTTCAATTACATCACATGGCGGATGAGAGCGTTGACTTGTCAAACCCTAGAGACGAGAGGTTACGAATGGTGAAGTCGTTGAATCCGAAAGTTGTTACGTTAGTTGAGCAAGAATCGAATACGAATACTGCGGCGTTCTTTCCGAGGTTTTTGGAGGTTTTGGATTATTACACTGCGATTTTCGAAAGTATTGATGCATCGTTACCGAGAGATAGGAAAAAGCAGATTAATGTCGAACAACATTGTTTGGCGAGAGATATTGTGAATATTATTGCGTGTGAAGGTAAGGAAAGAGTTGAAAGACATGAGTTGTTTATGAAGTGGAGGTCGCGGTTTATGATGGCGGGGTTTACGCAGTACCCATTGAGTTCGTATGTGAATTCGGTTATTAGAAGTCTTTTGAAACGTTATTCGGAGAATTATACGTTGGTTGAGAAAGATGGAGCTATGTTGTTGGGATGGAAGGAGAGAAATCTTATAGCGGCATCTGCTTGGCATTGA 1212 45.79 MKNALHDIETTLMAPDDDVTMSMTRTGRPGSDLNHLLIACASALASNKLDEFDELVEQARAFVSISGDPIQRLGAYIVEGLVARKESSGNNIYRALKCKEPLGEELLSYMHILYEICPYLKFGYMAANGAIAEAVRTEDRIHIIDFQIAQGTQWMTLLQALAARPGGPPHVRITGIDDPVSRYARGETLELVGKRLELVSQKFKIPIEFHPIQVFAPFVTKEMLDIRPGEAIAVNFALQLHHMADESVDLSNPRDERLRMVKSLNPKVVTLVEQESNTNTAAFFPRFLEVLDYYTAIFESIDASLPRDRKKQINVEQHCLARDIVNIIACEGKERVERHELFMKWRSRFMMAGFTQYPLSSYVNSVIRSLLKRYSENYTLVEKDGAMLLGWKERNLIAASAWH 403
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03428 403 ProSiteProfiles GRAS family profile. 24 403 IPR005202 -
Cien5g03428 403 Pfam GRAS domain family 33 402 IPR005202 -
Cien5g03428 403 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 31 402 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03428 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1693533 Cien Cien5g01220 Cien-Chr5:20933184 Cien5g03428 Cien-Chr5:80283126
1693534 Cien Cien5g01221 Cien-Chr5:20948538 Cien5g03428 Cien-Chr5:80283126
1694795 Cien Cien5g03428 Cien-Chr5:80283126 Cien6g00116 Cien-Chr6:1787678
1707841 Cien Cien5g03428 Cien-Chr5:80283126 Cien1g02991 Cien-Chr1:80686183
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cien9g00191 . 85 555 GRAS Transcription Factor family AT4G00150 49.385 1.66e-162 477.0
Cien9g01915 . 40 444 GRAS Transcription Factor family AT1G55580 49.88 4.01e-123 364.0
Cien8g00180 . 2 405 GRAS Transcription Factor family AT5G41920 63.593 0.0 521.0
Cien8g00244 . 26 582 GRAS Transcription Factor family AT2G01570 63.478 0.0 700.0
Cien8g00273 ACH 43 110 GRAS Transcription Factor family AT2G01570 64.706 8.48e-22 97.1
Cien8g01429 . 152 525 GRAS Transcription Factor family AT4G17230 61.316 6.85e-168 479.0
Cien8g01594 . 1 409 GRAS Transcription Factor family AT3G49950 43.868 3.44e-119 352.0
Cien8g01946 . 221 581 GRAS Transcription Factor family AT2G01570 33.159 1.59e-66 224.0
Cien8g02516 ACH 37 484 GRAS Transcription Factor family AT4G36710 51.092 5.54e-138 405.0
Cien8g03055 . 24 478 GRAS Transcription Factor family AT1G50420 38.428 1.99e-106 321.0
Cien8g03369 . 117 507 GRAS Transcription Factor family AT1G66350 41.093 1.65e-99 311.0
Cien7g00060 . 92 555 GRAS Transcription Factor family AT4G00150 41.131 1.17e-105 326.0
Cien7g01512 . 21 530 GRAS Transcription Factor family AT1G14920 58.912 0.0 613.0
Cien7g01873 . 1 584 GRAS Transcription Factor family AT5G66770 57.167 0.0 585.0
Cien7g01880 ACH 37 485 GRAS Transcription Factor family AT4G36710 51.416 1.82e-142 417.0
Cien7g01985 ACH 1 530 GRAS Transcription Factor family AT4G37650 58.228 0.0 564.0
Cien7g02001 . 12 409 GRAS Transcription Factor family AT3G49950 61.391 0.0 516.0
Cien7g02915 . 141 530 GRAS Transcription Factor family AT4G37650 52.357 1.14e-138 405.0
Cien6g00116 . 41 490 GRAS Transcription Factor family AT5G48150 66.444 0.0 607.0
Cien6g00184 . 144 506 GRAS Transcription Factor family AT1G66350 34.896 4.08e-75 245.0
Cien6g00402 . 146 197 GRAS Transcription Factor family AT3G13840 55.769 1.21e-09 53.1
Cien6g00855 . 324 397 GRAS Transcription Factor family AT4G00150 49.351 6.39e-15 69.7
Cien6g02047 . 245 351 GRAS Transcription Factor family AT3G13840 42.982 6.57e-24 96.3
Cien5g00112 . 86 126 GRAS Transcription Factor family AT2G37650 65.854 3.34e-14 65.1
Cien5g01217 . 316 767 GRAS Transcription Factor family AT1G07530 51.327 4.64e-162 477.0
Cien5g01219 ACH 329 768 GRAS Transcription Factor family AT1G07530 47.273 2.04e-150 446.0
Cien5g01220 . 300 764 GRAS Transcription Factor family AT1G07530 51.158 1.89e-169 499.0
Cien5g01221 . 1 767 GRAS Transcription Factor family AT1G07530 46.839 0.0 625.0
Cien5g03131 . 34 490 GRAS Transcription Factor family AT5G48150 61.028 0.0 568.0
Cien5g03428 . 69 489 GRAS Transcription Factor family AT5G48150 59.857 0.0 516.0
Cien5g03539 . 141 506 GRAS Transcription Factor family AT1G66350 35.584 1.18e-62 212.0
Cien5g03627 . 41 444 GRAS Transcription Factor family AT1G55580 49.02 1.86e-119 353.0
Cien5g03730 . 155 597 GRAS Transcription Factor family AT1G50600 64.574 0.0 580.0
Cien4g00742 . 1 479 GRAS Transcription Factor family AT1G50420 62.083 0.0 589.0
Cien4g01391 . 192 377 GRAS Transcription Factor family AT5G52510 43.59 2.63e-26 105.0
Cien4g02553 . 506 544 GRAS Transcription Factor family AT4G00150 74.359 7.68e-15 70.1
Cien4g03131 . 154 519 GRAS Transcription Factor family AT5G17490 34.596 3.41e-53 185.0
Cien4g03132 . 154 519 GRAS Transcription Factor family AT5G17490 31.98 6.31e-49 173.0
Cien4g03242 . 17 593 GRAS Transcription Factor family AT1G21450 54.16 0.0 590.0
Cien3g00388 ACH 99 767 GRAS Transcription Factor family AT1G07530 44.718 0.0 536.0
Cien3g01206 . 335 461 GRAS Transcription Factor family AT1G07530 38.583 1.64e-20 84.7
Cien3g01539 . 37 126 GRAS Transcription Factor family AT2G37650 44.444 1.03e-18 79.3
Cien3g03631 . 257 714 GRAS Transcription Factor family AT2G37650 52.814 3.47e-164 485.0
Cien3g03656 . 324 458 GRAS Transcription Factor family AT3G13840 51.389 3.07e-38 139.0
Cien3g03940 ACH 35 640 GRAS Transcription Factor family AT5G52510 46.688 9.22e-148 440.0
Cien3g04050 . 328 466 GRAS Transcription Factor family AT1G07530 40.0 9.40e-25 98.2
Cien2g00339 . 4 482 GRAS Transcription Factor family AT1G50420 63.466 0.0 603.0
Cien2g01075 . 45 545 GRAS Transcription Factor family AT3G03450 62.894 0.0 660.0
Cien2g01322 . 31 94 GRAS Transcription Factor family AT1G66350 59.091 1.78e-16 72.8
Cien2g01364 ACH 37 486 GRAS Transcription Factor family AT4G36710 50.652 5.26e-141 414.0
Cien2g01450 ACH 39 530 GRAS Transcription Factor family AT4G37650 56.66 0.0 520.0
Cien2g01573 . 31 640 GRAS Transcription Factor family AT5G52510 41.308 2.01e-125 382.0
Cien2g01614 . 20 93 GRAS Transcription Factor family AT1G66350 59.211 5.73e-23 90.1
Cien2g02024 . 86 767 GRAS Transcription Factor family AT1G07530 45.599 0.0 563.0
Cien2g02845 . 409 474 GRAS Transcription Factor family AT3G54220 41.791 5.76e-07 43.9
Cien2g03443 ACH 9 510 GRAS Transcription Factor family AT3G13840 48.577 1.31e-158 461.0
Cien2g04378 . 172 544 GRAS Transcription Factor family AT3G03450 36.132 8.57e-64 214.0
Cien1g00226 . 22 654 GRAS Transcription Factor family AT1G63100 50.225 0.0 556.0
Cien1g00303 . 205 555 GRAS Transcription Factor family AT4G00150 49.863 5.74e-108 334.0
Cien1g00352 . 172 547 GRAS Transcription Factor family AT3G03450 27.179 2.73e-48 174.0
Cien1g00353 . 172 547 GRAS Transcription Factor family AT3G03450 29.923 3.26e-55 192.0
Cien1g01132 . 408 454 GRAS Transcription Factor family AT4G36710 53.191 2.17e-10 52.8
Cien1g02214 . 27 529 GRAS Transcription Factor family AT1G14920 49.119 7.29e-165 476.0
Cien1g02623 ACH 1 510 GRAS Transcription Factor family AT3G13840 47.228 3.22e-153 446.0
Cien1g02991 . 40 490 GRAS Transcription Factor family AT5G48150 61.255 0.0 563.0
Cien1g03058 . 178 546 GRAS Transcription Factor family AT3G03450 30.287 2.35e-58 202.0
Cien1g03504 . 15 712 GRAS Transcription Factor family AT2G37650 49.111 0.0 656.0
Cien1g03506 . 73 712 GRAS Transcription Factor family AT2G37650 52.593 0.0 659.0
Cien1g03874 . 20 748 GRAS Transcription Factor family AT1G07530 46.414 0.0 597.0
Cien1g04277 . 276 650 GRAS Transcription Factor family AT3G54220 55.291 1.47e-143 425.0
Cien1g04403 . 293 332 GRAS Transcription Factor family AT3G03450 80.0 1.44e-17 73.6
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cien GRAS 2.6e-134 CL0063 TF GRAS