AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03471 ATGCACAACGTTCAGGACCTTCATCTGACTTTCTTTCAAGAGGATCCATCTGTGATTCCTTGGTCTATGTTTGATGGCACATCATTGGTTAGCCTGAAAATAAGAGCGAATTCTGATACTGAACTCCCATCTTGTATTTCTTTTCCATGTCTGAAAACCCTGCATCTATTATCTGTTGTATTCCCGAACAATGATCATGCAGAAAAGCTTTTCTTAGGGTGTCCAGTTTTAGAGGAGTTGGTTTTATCAGACAACTGGATGAACTTGAAGAACATTGTGATTTCCAGTTCCACCTTAAAAAGCTTGAAAATAAAAGATTGGGAACCCTTTCCGCCATTATATGATCCTACCAGTGCCTGTAAAATTAAGATTGATGCAGCAAATCTTACAAATTTTGACTATACTGGAGTTCTGGAAAACGAGTTTCTCTTGAATAATGTATCATCCCTGGTTAAAGCATGCATTCACATTCCTTCTGAGTGGCCAAAAGAAGTCGCATGTCGAGTTATTGATCTACTCAAACAACAACGATATGTTGTGTCTTTGAAGCTATCAAGTTGCACTCTAGAGGGATTCAAGAAATGCATGCACCTTGGTGAGAAGGATCCAGTTTTGTTATCAATACCTTTATGCATGTCGAATTGCCTCAAGACACTGACCTTCAAGAAGCTTCATGCTTATAATTCAGAAATATGTTTCCTCAAATGTGTTTTGAAGTATGCACATGTTTTAGAGAAGATGGATATCTCATGGTCCAAGAATCAGAATCGGCTACCATTCCTAAAGGATAAAAGTGAGGTAAGGAAAGAATTGGAAACACTAAAAAGGAGCTCTACAGTTTGTGTCATCAAGTTCTCGTGA 861 38.21 MHNVQDLHLTFFQEDPSVIPWSMFDGTSLVSLKIRANSDTELPSCISFPCLKTLHLLSVVFPNNDHAEKLFLGCPVLEELVLSDNWMNLKNIVISSSTLKSLKIKDWEPFPPLYDPTSACKIKIDAANLTNFDYTGVLENEFLLNNVSSLVKACIHIPSEWPKEVACRVIDLLKQQRYVVSLKLSSCTLEGFKKCMHLGEKDPVLLSIPLCMSNCLKTLTFKKLHAYNSEICFLKCVLKYAHVLEKMDISWSKNQNRLPFLKDKSEVRKELETLKRSSTVCVIKFS 286
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03471 286 Gene3D Ribonuclease Inhibitor 1 132 IPR032675 -
Cien5g03471 286 Pfam Leucine Rich Repeat 50 75 IPR013101 -
Cien5g03471 286 Pfam FBD 207 249 IPR006566 -
Cien5g03471 286 PANTHER F-BOX-RNI SUPERFAMILY PROTEIN-RELATED 200 282 IPR050232 -
Cien5g03471 286 SUPERFAMILY RNI-like 10 256 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03471 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1694814 Cien Cien5g03471 Cien-Chr5:80720503 Cien5g03476 Cien-Chr5:80743403
1703011 Cien Cien5g03470 Cien-Chr5:80714997 Cien5g03471 Cien-Chr5:80720503
1703012 Cien Cien5g03471 Cien-Chr5:80720503 Cien5g03472 Cien-Chr5:80726699