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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03518 ATGCATGTCAAAGAAGATAAAGAACAAGATAGAGTTCATCATGAACTCCAACTCAACTTAAATGTGGGTTCGAATCTTACTACAACAAATACGAAAAGCCAAAATCCTCATAAGTTGGCTATCTTACAGGCCGAGCTCGAAAAGATGAAGCGAGAAAATGAAAGTTTGCGATCGATGCTTGCTCAAATTAAAGAAAAATATATTTTTCTACAAAGACACATTAAGTCGATAAATGTGCTGGAAGATGATTCAAGACGAAGCTTGTTGGTTCCTTTGGAATTCAAAAATCTCAATCGATCAATGAAGATTGATCCAAATGTTGATAGCCCAACTGATATAAACAAAGATGTTAAGTTCGATTCACCAACAGATCGTAATCAAGGACTGGCTGAACCAACGATGAGAAGGGCCCGTGTGTCTGTCCGGGCTCGGTCCGAAGCATCAATGATTTCAGATGGCTGTCAATGGAGAAAATATGGACAAAAAATGGCTAAAGGGAATCCATGTCCTCGGGCTTATTATCGTTGTACCATGGCTGTTGGTTGTCCAGTACGCAAACAAGTACAACGATCTGTTGAAGATCAGACGATTTTGATAACAACATACGAAGGCACGCACAACCATCCGCTACCACAAGCCGCCATGACAATGGCCTCCACCACTTCTGCCGCTGCCTCTATGCTACTCTCCGGTTCAGTTTCAAGCTCTGACAAACACAATCACCACCTTACCGCAGGATCTATGCTTTCTTCTTACCATCCGAATATGACCACCACATTGTCAGCCACTTCACCATTTCCTACCATTACGTTAGATCTTACAAATCCTAGCTCCGACTACCATCTCCGAGAACCCCCGTTCAACTTCCCTTTTCTTACGAATACACATCATAATTATAGTCTTCCTGACAAGACATCGGCTTTAGAACCGTCGGAAGCTCAACAATACATGGCAACAAAGTTTTCTGACATCCAAAGCTCCAACCAAGAGGCGATGAGGGCAGCTACGACAGCCATCACGACGGATCCACACTTCATGGCAACTTTGGTTGCTGTGATCAACTCCATTATTACAAATGATGGTGTTAGCAACAATCAAGATAAAGATAATAATTTTATGAGAAACTAG 1128 42.02 MHVKEDKEQDRVHHELQLNLNVGSNLTTTNTKSQNPHKLAILQAELEKMKRENESLRSMLAQIKEKYIFLQRHIKSINVLEDDSRRSLLVPLEFKNLNRSMKIDPNVDSPTDINKDVKFDSPTDRNQGLAEPTMRRARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRSVEDQTILITTYEGTHNHPLPQAAMTMASTTSAAASMLLSGSVSSSDKHNHHLTAGSMLSSYHPNMTTTLSATSPFPTITLDLTNPSSDYHLREPPFNFPFLTNTHHNYSLPDKTSALEPSEAQQYMATKFSDIQSSNQEAMRAATTAITTDPHFMATLVAVINSIITNDGVSNNQDKDNNFMRN 375
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03518 375 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 17 363 IPR044810 GO:0003700(InterPro)
Cien5g03518 375 FunFam probable WRKY transcription factor 31 135 212 - -
Cien5g03518 375 Gene3D WRKY domain 135 212 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cien5g03518 375 SMART WRKY-cls 150 210 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cien5g03518 375 MobiDBLite consensus disorder prediction 105 128 - -
Cien5g03518 375 Pfam WRKY DNA -binding domain 152 209 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cien5g03518 375 Coils Coil 39 66 - -
Cien5g03518 375 SUPERFAMILY WRKY DNA-binding domain 143 211 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cien5g03518 375 ProSiteProfiles WRKY domain profile. 145 211 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03518 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
66583 Cien5g03518 Cien6g00002
66584 Cien5g03518 Cien9g02037
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr1:86062697 Cien5g03518 Cien-Chr5:81117753 dispersed
Cien Cien-Chr5:81117753 Cien8g01356 Cien-Chr8:21585947 dispersed
Cien Cien-Chr2:78671417 Cien5g03518 Cien-Chr5:81117753 transposed
Cien Cien-Chr6:22605984 Cien5g03518 Cien-Chr5:81117753 transposed
Cien Cien-Chr7:8428732 Cien5g03518 Cien-Chr5:81117753 transposed
Cien Cien-Chr5:81117753 Cien9g00315 Cien-Chr9:5166590 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cien9g00315 ACH 81 540 WRKY Transcription Factor family AT1G62300 47.992 1.92e-119 360.0
Cien9g00670 . 61 405 WRKY Transcription Factor family AT2G34830 46.218 6.63e-79 247.0
Cien9g00792 . 67 318 WRKY Transcription Factor family AT4G18170 45.211 1.10e-61 197.0
Cien9g00813 . 14 775 WRKY Transcription Factor family AT5G45050 26.488 3.75e-58 214.0
Cien9g01138 . 668 1425 WRKY Transcription Factor family AT4G12020 27.315 9.79e-51 195.0
Cien9g01160 . 14 813 WRKY Transcription Factor family AT5G45050 26.705 2.44e-57 216.0
Cien9g01161 . 14 766 WRKY Transcription Factor family AT5G45050 27.066 1.54e-56 212.0
Cien9g01165 . 122 813 WRKY Transcription Factor family AT5G45050 25.981 5.38e-44 172.0
Cien9g01210 . 164 420 WRKY Transcription Factor family AT4G30935 49.43 8.81e-78 246.0
Cien9g01359 ACH 52 306 WRKY Transcription Factor family AT4G31550 43.893 1.17e-52 172.0
Cien9g01369 . 8 504 WRKY Transcription Factor family AT5G45050 26.763 1.91e-36 144.0
Cien9g01519 . 21 169 WRKY Transcription Factor family AT5G26170 52.632 5.55e-40 134.0
Cien9g01974 . 668 1271 WRKY Transcription Factor family AT4G12020 28.0 6.32e-71 249.0
Cien9g01994 ACH 288 397 WRKY Transcription Factor family AT4G26640 73.043 2.25e-51 170.0
Cien9g01995 ACH 3 431 WRKY Transcription Factor family AT4G26640 47.072 1.94e-110 335.0
Cien9g02073 . 14 589 WRKY Transcription Factor family AT5G45050 27.512 1.64e-60 219.0
Cien9g02077 . 1108 1252 WRKY Transcription Factor family AT4G12020 27.811 1.94e-09 55.1
Cien8g00153 ACH 295 391 WRKY Transcription Factor family AT4G12020 50.98 1.25e-20 97.1
Cien8g00685 . 1 296 WRKY Transcription Factor family AT4G01250 42.029 3.50e-67 211.0
Cien8g00773 . 1140 1448 WRKY Transcription Factor family AT4G12020 33.956 2.62e-26 112.0
Cien8g01071 . 12 251 WRKY Transcription Factor family AT1G29280 49.621 9.77e-81 243.0
Cien8g01356 ACH 4 542 WRKY Transcription Factor family AT1G62300 48.601 1.00e-138 410.0
Cien8g02174 . 182 295 WRKY Transcription Factor family AT4G39410 77.193 4.13e-58 183.0
Cien8g02489 . 732 1412 WRKY Transcription Factor family AT4G12020 28.906 5.28e-66 238.0
Cien8g02490 . 660 1428 WRKY Transcription Factor family AT4G12020 28.033 1.89e-69 254.0
Cien8g02494 . 732 869 WRKY Transcription Factor family AT4G12020 31.081 4.80e-16 75.1
Cien8g02496 . 14 757 WRKY Transcription Factor family AT5G45050 30.123 6.01e-72 260.0
Cien8g02634 . 15 124 WRKY Transcription Factor family AT1G80840 40.0 4.44e-15 69.7
Cien8g02828 . 27 347 WRKY Transcription Factor family AT4G24240 48.083 7.37e-90 270.0
Cien8g02929 . 143 770 WRKY Transcription Factor family AT5G45050 22.761 3.23e-10 62.4
Cien8g02930 . 143 770 WRKY Transcription Factor family AT5G45050 23.167 3.36e-11 65.5
Cien8g02932 . 143 770 WRKY Transcription Factor family AT5G45050 23.796 4.73e-13 71.6
Cien8g02933 . 143 399 WRKY Transcription Factor family AT5G45050 25.887 8.64e-09 57.4
Cien8g03081 . 304 363 WRKY Transcription Factor family AT2G30590 38.333 1.55e-08 48.9
Cien8g03140 ACH 20 468 WRKY Transcription Factor family AT1G13960 47.009 3.17e-122 365.0
Cien8g03239 ACH 297 395 WRKY Transcription Factor family AT4G12020 47.826 1.84e-23 106.0
Cien7g00324 . 1 280 WRKY Transcription Factor family AT4G23550 36.164 3.90e-47 160.0
Cien7g00325 . 64 176 WRKY Transcription Factor family AT5G41570 70.435 1.55e-58 180.0
Cien7g00334 ACH 48 297 WRKY Transcription Factor family AT4G12020 50.598 7.46e-72 249.0
Cien7g00684 ACH 35 293 WRKY Transcription Factor family AT1G80840 42.471 1.70e-53 175.0
Cien7g00849 ACH 54 143 WRKY Transcription Factor family AT5G13080 87.778 1.23e-56 174.0
Cien7g01406 ACH 299 376 WRKY Transcription Factor family AT4G12020 54.43 3.29e-19 92.4
Cien7g01441 . 15 467 WRKY Transcription Factor family AT5G15130 36.235 1.55e-57 196.0
Cien7g02257 ACH 247 512 WRKY Transcription Factor family AT2G03340 43.657 2.37e-64 210.0
Cien7g02366 ACH 295 395 WRKY Transcription Factor family AT4G12020 47.458 7.99e-24 107.0
Cien7g02963 . 152 403 WRKY Transcription Factor family AT5G45050 28.881 8.87e-11 64.7
Cien7g02998 . 155 403 WRKY Transcription Factor family AT5G45050 28.195 4.28e-12 67.0
Cien7g03052 . 166 446 WRKY Transcription Factor family AT5G45050 27.532 3.05e-11 66.2
Cien6g00270 . 16 514 WRKY Transcription Factor family AT5G15130 37.063 6.83e-77 251.0
Cien6g01133 ACH 45 267 WRKY Transcription Factor family AT2G25000 38.596 5.80e-46 152.0
Cien6g01643 . 145 337 WRKY Transcription Factor family AT2G47260 49.749 9.01e-52 171.0
Cien6g01993 . 660 1344 WRKY Transcription Factor family AT4G12020 28.59 1.27e-70 257.0
Cien5g00053 . 37 134 WRKY Transcription Factor family AT1G29280 55.882 1.98e-33 121.0
Cien5g00639 . 1172 1439 WRKY Transcription Factor family AT4G12020 33.569 6.94e-28 112.0
Cien5g00740 . 22 149 WRKY Transcription Factor family AT1G13960 41.481 9.93e-17 74.3
Cien5g00909 . 2 263 WRKY Transcription Factor family AT5G43290 38.007 2.79e-44 149.0
Cien5g01024 . 143 773 WRKY Transcription Factor family AT5G45050 23.716 4.80e-10 61.6
Cien5g01421 ACH 40 518 WRKY Transcription Factor family AT2G38470 45.905 2.53e-104 323.0
Cien5g01830 . 91 284 WRKY Transcription Factor family AT4G12020 60.513 1.06e-69 242.0
Cien5g01887 ACH 2 186 WRKY Transcription Factor family AT3G56400 46.114 1.79e-44 151.0
Cien5g01889 ACH 2 186 WRKY Transcription Factor family AT3G56400 45.596 2.60e-44 151.0
Cien5g02668 . 701 816 WRKY Transcription Factor family AT5G45050 33.613 2.85e-06 48.9
Cien5g02855 ACH 91 286 WRKY Transcription Factor family AT4G12020 56.5 5.36e-65 229.0
Cien5g03436 . 1328 1454 WRKY Transcription Factor family AT4G12020 35.385 3.66e-06 49.3
Cien5g03518 ACH 101 553 WRKY Transcription Factor family AT1G62300 41.176 2.46e-75 241.0
Cien5g03633 . 1 685 WRKY Transcription Factor family AT5G56270 45.354 4.73e-161 479.0
Cien5g03728 ACH 6 371 WRKY Transcription Factor family AT4G26640 50.0 4.39e-102 311.0
Cien4g00194 . 14 813 WRKY Transcription Factor family AT5G45050 26.177 4.91e-53 201.0
Cien4g00633 . 1119 1237 WRKY Transcription Factor family AT4G12020 35.714 1.31e-11 60.1
Cien4g00645 . 1115 1339 WRKY Transcription Factor family AT4G12020 30.833 4.02e-18 81.3
Cien4g00646 . 1116 1463 WRKY Transcription Factor family AT4G12020 28.255 1.93e-15 78.6
Cien4g00658 . 1116 1237 WRKY Transcription Factor family AT4G12020 33.835 1.58e-09 53.5
Cien4g00665 . 1116 1183 WRKY Transcription Factor family AT4G12020 36.0 2.94e-06 43.9
Cien4g00784 . 663 1432 WRKY Transcription Factor family AT4G12020 25.728 4.51e-51 196.0
Cien4g01037 . 1 218 WRKY Transcription Factor family AT2G44745 52.137 2.90e-67 204.0
Cien4g01088 . 1116 1274 WRKY Transcription Factor family AT4G12020 30.168 1.38e-11 60.8
Cien4g02810 ACH 27 340 WRKY Transcription Factor family AT4G24240 49.102 2.57e-93 280.0
Cien4g02890 . 162 655 WRKY Transcription Factor family AT5G45050 22.242 3.28e-13 72.4
Cien4g02891 . 140 655 WRKY Transcription Factor family AT5G45050 23.652 1.70e-14 76.3
Cien4g02892 . 153 655 WRKY Transcription Factor family AT5G45050 23.55 1.39e-14 76.3
Cien4g02896 . 816 1423 WRKY Transcription Factor family AT4G12020 22.828 4.61e-08 55.1
Cien4g03362 . 25 133 WRKY Transcription Factor family AT5G26170 30.252 1.59e-12 60.1
Cien3g01119 . 60 518 WRKY Transcription Factor family AT2G38470 48.566 1.44e-122 367.0
Cien3g01323 . 1116 1160 WRKY Transcription Factor family AT4G12020 40.0 2.73e-07 43.5
Cien3g01329 . 668 1448 WRKY Transcription Factor family AT4G12020 27.815 1.90e-55 210.0
Cien3g02187 ACH 54 144 WRKY Transcription Factor family AT5G13080 90.11 2.55e-58 178.0
Cien3g02608 ACH 304 387 WRKY Transcription Factor family AT4G12020 41.667 1.94e-09 59.7
Cien3g02745 . 740 1444 WRKY Transcription Factor family AT4G12020 27.07 6.01e-56 209.0
Cien3g02748 . 668 1248 WRKY Transcription Factor family AT4G12020 28.0 8.54e-61 219.0
Cien3g02750 . 122 666 WRKY Transcription Factor family AT5G45050 29.84 1.07e-59 221.0
Cien3g02756 . 668 1413 WRKY Transcription Factor family AT4G12020 28.856 3.15e-69 251.0
Cien3g02758 . 12 513 WRKY Transcription Factor family AT2G03340 53.396 4.02e-153 447.0
Cien3g02786 . 1218 1444 WRKY Transcription Factor family AT4G12020 26.778 4.11e-06 47.8
Cien3g02836 . 1 286 WRKY Transcription Factor family AT1G69310 47.697 2.41e-69 215.0
Cien3g03494 . 668 1035 WRKY Transcription Factor family AT4G12020 26.303 1.39e-30 123.0
Cien3g03948 . 144 249 WRKY Transcription Factor family AT5G52830 67.29 1.21e-48 160.0
Cien3g03970 . 21 184 WRKY Transcription Factor family AT5G24110 38.384 7.15e-37 133.0
Cien2g00165 . 1132 1501 WRKY Transcription Factor family AT4G12020 31.905 2.82e-33 135.0
Cien2g00166 . 1118 1506 WRKY Transcription Factor family AT4G12020 30.29 3.28e-30 126.0
Cien2g00169 . 1112 1396 WRKY Transcription Factor family AT4G12020 34.0 6.18e-29 122.0
Cien2g00209 . 668 1332 WRKY Transcription Factor family AT4G12020 31.356 1.54e-80 278.0
Cien2g01743 ACH 7 181 WRKY Transcription Factor family AT3G56400 43.716 2.65e-39 139.0
Cien2g01744 ACH 12 302 WRKY Transcription Factor family AT2G40750 32.776 4.79e-38 135.0
Cien2g01746 . 11 290 WRKY Transcription Factor family AT2G40740 38.372 1.08e-63 203.0
Cien2g02229 . 1144 1439 WRKY Transcription Factor family AT4G12020 36.513 1.10e-33 138.0
Cien2g02894 ACH 297 395 WRKY Transcription Factor family AT4G12020 48.276 3.75e-24 108.0
Cien2g03072 . 1117 1445 WRKY Transcription Factor family AT4G12020 33.934 3.15e-33 137.0
Cien2g03243 . 6 302 WRKY Transcription Factor family AT1G80840 50.456 1.58e-98 291.0
Cien2g04100 . 14 606 WRKY Transcription Factor family AT5G45050 27.812 1.76e-63 227.0
Cien2g04229 . 54 144 WRKY Transcription Factor family AT5G13080 86.813 1.31e-56 174.0
Cien2g04271 ACH 28 345 WRKY Transcription Factor family AT4G24240 48.864 2.11e-95 285.0
Cien1g00168 . 36 139 WRKY Transcription Factor family AT5G24110 28.846 3.87e-06 43.5
Cien1g00185 ACH 161 213 WRKY Transcription Factor family AT4G12020 56.364 1.48e-11 62.4
Cien1g01866 ACH 1 317 WRKY Transcription Factor family AT4G31550 37.082 2.67e-50 167.0
Cien1g02958 . 57 553 WRKY Transcription Factor family AT1G62300 48.197 1.74e-122 370.0
Cien1g03262 ACH 97 286 WRKY Transcription Factor family AT4G12020 48.98 9.81e-48 177.0
Cien1g03281 . 49 371 WRKY Transcription Factor family AT1G68150 41.823 5.07e-75 239.0
Cien1g03287 . 1116 1342 WRKY Transcription Factor family AT4G12020 33.603 1.17e-21 98.2
Cien1g03338 . 14 848 WRKY Transcription Factor family AT5G45050 28.405 5.06e-99 342.0
Cien1g03341 . 638 773 WRKY Transcription Factor family AT5G45050 29.197 2.93e-06 48.1
Cien1g03350 . 496 789 WRKY Transcription Factor family AT5G45050 27.273 2.26e-18 88.2
Cien1g04019 ACH 40 467 WRKY Transcription Factor family AT2G38470 44.639 1.03e-92 290.0
Cien1g04334 . 1 328 WRKY Transcription Factor family AT3G04670 50.0 9.18e-91 271.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cien WRKY 7.9e-26 CL0274 TF WRKY