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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03532 ATGGTAGCTGTTAAGGGTTTAAGCACTTTTAAGAGTAGGCTTTCAGCAGAACGCGAGGCCAGGAAGAGCGGTGGAGTCAGAAGTTTCAAGGTGTATACAGAAACTGAAAAGGTTAAGATTCGTAGTGGGGATCATATTGCTGCTGAGACTAAAAGGAAGTCTATGCCAGTCAAAGCTGAAACCAGTCAAATTCAAGCCAATTGTGCAAAGGTTGCCCTCAACAAGTTGGACAAGATTCATGGGAAAAGCATAAACTCTAATCAAACTAAAGTAGGAAGAAAAGTGCTGGCTGACATCAGCAATTCACAGAGTAATCTTCAGAAAAATCAAACTTCTGATGGCTCCAAATCTGGGAAAGTTAAAATGGAAAAGGTGGCATATTCACAACGCGCTTCAATTGGTACAAAATCAAGAAATGCAAGTTCTTTATCAGGAAAACTTTCAATGGGAACGCGTGTTGGAAGCCAGAGTAAAGCTGCTGATGACCGTGTTACACTGGGTAGAGTGGGCACCAAGGATTTGAAGGTCTTCAATGGTAATCCAAGGACAAGGCTACAGGCTAAAGAAACCGTTGGTCATGCTACAAGGAAATCTTTGCCAGTTTTAAAGCATGTTGATAAGACGGATACATGTGATATCAAGAAGGGAAATTTGGGAAATAAAGCAAAGAACAAGGAGAAATTTGGCTTCTCTGTTAAACCTAAAGTTGGGACGACAGTTGTACCGCAAGCAAGCAATGGGAGGGAGCCTTGTTTGAAGAATAGAGTTAGTGATGGATCTATAAAAATGGGGTCCGAGGGTCAGTCAACGGGGAATACAAAGATATTGTCTAGGAGGTCAATTAAGAAAACGGAGGAAACATCTGCAACTACATCAAATCCAACTGCTAAAGGAAAATCCAGGCGGCGAAAATCATACACGTCTTTACTAATTGAAGGATCAAAGATGCTAAAGGATCTTGGCAGTGTCACCAAGGAGGAGATTTTGCCTGATATATATGATGATCGCAATCAACTTGAAGTTTCTGAATATATTGATGAGATTTATCAGCATTATTGGGTTACCGAAGCACATCATCAGTCACTTAAGAACTATATGGAGATCCAGACAGACATCACGTCTCAGATGCGGGGGATTCTCATCAATTGGCTTATAGAAGTACATTTGAAATTTGATTTGATGCAAGAGACGCTGTATTTGATGGTCACGTTACTAGACTATTACTTGTCAGTTGTCAATATTAAAAAAAACGAAATGCAATTAGTTGGTCTCACAGCGTTATTGCTAGCGTCAAAATACGAAGATTTTTGGCATCCCAAGGTTATGGAGTTAATTAGCATCTCTGCAGAGTTATACACAAGAGAGCAAATGCTCACGATGGAGACGACAATTTTACATAAGCTAAACTTTCGTCTTAATTTGCCCACACCATATGTTTTCATGCTGAGATTTCTTAGAGCTGCTAAAGGAAGCAAAGAGTTTGAAAACCTAGCCTTCTTTCTCATTGAGCTGTGTTTAGTGGAATACGATGCTTTACATTTCAAGCCATCATTGCTATGTGCATCAGCCATTTACGTAGCCAGATGTACCCTCCATATATCCCCACCATGGACCCCACTTCTTTCCAAGCATTCTCACTATCAGGAATGTCAAATTAGGGATTGTGCGGAAATGATCTTGAGATTTCACCAAGCTGCAAGAACAGCCGTGCTGAAAGTTACATTTGACAAATACATGAGCAATCATAACTTCAAAGTTGCAAGTATCAGACCTCTCAACAGGCTTCCATCTCCTTGA 1797 40.4 MVAVKGLSTFKSRLSAEREARKSGGVRSFKVYTETEKVKIRSGDHIAAETKRKSMPVKAETSQIQANCAKVALNKLDKIHGKSINSNQTKVGRKVLADISNSQSNLQKNQTSDGSKSGKVKMEKVAYSQRASIGTKSRNASSLSGKLSMGTRVGSQSKAADDRVTLGRVGTKDLKVFNGNPRTRLQAKETVGHATRKSLPVLKHVDKTDTCDIKKGNLGNKAKNKEKFGFSVKPKVGTTVVPQASNGREPCLKNRVSDGSIKMGSEGQSTGNTKILSRRSIKKTEETSATTSNPTAKGKSRRRKSYTSLLIEGSKMLKDLGSVTKEEILPDIYDDRNQLEVSEYIDEIYQHYWVTEAHHQSLKNYMEIQTDITSQMRGILINWLIEVHLKFDLMQETLYLMVTLLDYYLSVVNIKKNEMQLVGLTALLLASKYEDFWHPKVMELISISAELYTREQMLTMETTILHKLNFRLNLPTPYVFMLRFLRAAKGSKEFENLAFFLIELCLVEYDALHFKPSLLCASAIYVARCTLHISPPWTPLLSKHSHYQECQIRDCAEMILRFHQAARTAVLKVTFDKYMSNHNFKVASIRPLNRLPSP 598
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03532 598 MobiDBLite consensus disorder prediction 130 155 - -
Cien5g03532 598 MobiDBLite consensus disorder prediction 101 116 - -
Cien5g03532 598 FunFam Cyclin N-terminal domain containing 2 362 470 - -
Cien5g03532 598 PANTHER CYCLINS 327 578 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cien5g03532 598 MobiDBLite consensus disorder prediction 239 304 - -
Cien5g03532 598 Gene3D - 361 466 - -
Cien5g03532 598 FunFam putative cyclin-B3-1 isoform X3 471 596 - -
Cien5g03532 598 MobiDBLite consensus disorder prediction 261 277 - -
Cien5g03532 598 SMART cyclin-7 382 466 IPR013763 -
Cien5g03532 598 SMART cyclin-7 479 561 IPR013763 -
Cien5g03532 598 Pfam Cyclin, N-terminal domain 347 473 IPR006671 -
Cien5g03532 598 SMART Cyclin-C-2 475 592 IPR004367 -
Cien5g03532 598 MobiDBLite consensus disorder prediction 101 161 - -
Cien5g03532 598 Gene3D - 467 595 - -
Cien5g03532 598 SUPERFAMILY Cyclin-like 337 473 IPR036915 -
Cien5g03532 598 SUPERFAMILY Cyclin-like 475 594 IPR036915 -
Cien5g03532 598 Pfam Cyclin, C-terminal domain 475 591 IPR004367 -
Cien5g03532 598 PIRSF Cyclin-A-B-D-E 9 166 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cien5g03532 598 PIRSF Cyclin-A-B-D-E 47 225 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cien5g03532 598 PIRSF Cyclin-A-B-D-E 146 597 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cien5g03532 598 CDD CYCLIN-CCNB1-like-rpt1 341 470 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03532 K21777 G2/mitotic-specific cyclin-B, other
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Event-related genes

Select Gene_1 Gene_2 Event_name
66585 Cien5g03532 Cien9g01958
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:81204748 Cien7g03017 Cien-Chr7:74702215 dispersed
Cien Cien-Chr8:63247276 Cien5g03532 Cien-Chr5:81204748 dispersed
Cien Cien-Chr2:53577226 Cien5g03532 Cien-Chr5:81204748 transposed
Cien Cien-Chr5:81204748 Cien9g00307 Cien-Chr9:5097064 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cien9g00307 . 1 425 Core Cell Cycle gene family AT5G06150 41.096 8.50e-89 272.0
Cien9g00507 . 10 290 Core Cell Cycle gene family AT3G48750 35.395 2.89e-55 185.0
Cien9g00989 . 1 478 Core Cell Cycle gene family AT4G28980 55.28 0.0 518.0
Cien9g01663 . 223 365 Core Cell Cycle gene family AT1G76310 23.926 1.71e-06 48.1
Cien9g02643 . 1 68 Core Cell Cycle gene family AT4G28980 66.197 1.40e-24 93.6
Cien9g02664 . 18 359 Core Cell Cycle gene family AT5G10270 52.464 5.97e-117 358.0
Cien8g00132 . 12 338 Core Cell Cycle gene family AT1G70210 58.967 5.74e-126 362.0
Cien8g00402 . 190 399 Core Cell Cycle gene family AT5G06150 28.251 3.70e-23 100.0
Cien8g00725 . 1 294 Core Cell Cycle gene family AT3G48750 86.735 0.0 539.0
Cien8g01514 . 18 368 Core Cell Cycle gene family AT5G10270 51.136 1.16e-118 363.0
Cien8g01610 . 1 285 Core Cell Cycle gene family AT4G03270 41.216 7.49e-67 209.0
Cien8g01909 . 19 304 Core Cell Cycle gene family AT1G76540 25.449 2.76e-27 108.0
Cien8g01955 . 3 289 Core Cell Cycle gene family AT3G48750 48.148 1.16e-86 269.0
Cien8g02179 . 20 353 Core Cell Cycle gene family AT5G10270 45.133 4.77e-91 288.0
Cien8g02377 . 1 109 Core Cell Cycle gene family AT4G28980 40.179 8.71e-15 70.1
Cien8g02764 . 12 304 Core Cell Cycle gene family AT1G76540 29.841 5.61e-40 144.0
Cien8g02818 . 1 365 Core Cell Cycle gene family AT5G67260 44.764 1.41e-98 295.0
Cien8g02887 ACH 1 222 Core Cell Cycle gene family AT5G48820 31.048 1.56e-18 79.0
Cien8g03142 . 18 357 Core Cell Cycle gene family AT5G10270 45.748 6.60e-104 321.0
Cien8g03401 . 156 215 Core Cell Cycle gene family AT5G11300 58.333 2.96e-19 78.6
Cien8g03402 . 285 412 Core Cell Cycle gene family AT5G11300 47.656 3.20e-26 106.0
Cien7g00156 . 42 445 Core Cell Cycle gene family AT5G06150 48.905 7.37e-123 363.0
Cien7g00660 . 18 363 Core Cell Cycle gene family AT5G10270 52.161 5.57e-121 365.0
Cien7g00688 . 1 291 Core Cell Cycle gene family AT5G25380 43.042 1.09e-69 222.0
Cien7g00891 . 11 982 Core Cell Cycle gene family AT3G12280 68.389 0.0 1317.0
Cien7g01082 . 18 370 Core Cell Cycle gene family AT5G10270 49.435 2.34e-115 351.0
Cien7g02032 . 63 352 Core Cell Cycle gene family AT5G67260 49.329 2.49e-93 281.0
Cien7g02071 . 153 195 Core Cell Cycle gene family AT1G49620 67.442 6.87e-16 70.1
Cien7g02258 ACH 237 367 Core Cell Cycle gene family AT5G10270 34.351 1.22e-21 94.4
Cien7g03017 . 9 377 Core Cell Cycle gene family AT2G26760 54.293 1.45e-148 425.0
Cien6g00156 . 18 357 Core Cell Cycle gene family AT5G10270 51.906 1.68e-115 350.0
Cien6g00306 . 18 370 Core Cell Cycle gene family AT5G10270 44.875 6.77e-102 318.0
Cien6g00490 . 2 316 Core Cell Cycle gene family AT4G37630 37.931 1.40e-51 171.0
Cien6g00589 ACH 70 338 Core Cell Cycle gene family AT2G22490 50.916 4.66e-81 249.0
Cien6g00663 . 21 372 Core Cell Cycle gene family AT5G10270 45.055 1.42e-100 313.0
Cien6g00721 . 1 459 Core Cell Cycle gene family AT1G44110 59.792 0.0 553.0
Cien6g01094 . 76 244 Core Cell Cycle gene family AT5G27620 25.0 9.71e-06 45.8
Cien6g01209 . 1 290 Core Cell Cycle gene family AT3G48750 37.415 8.12e-69 219.0
Cien6g01365 . 18 363 Core Cell Cycle gene family AT5G10270 51.297 4.02e-118 357.0
Cien6g01913 . 10 289 Core Cell Cycle gene family AT3G48750 42.908 2.88e-80 243.0
Cien5g00009 . 6 391 Core Cell Cycle gene family AT1G18040 76.786 0.0 596.0
Cien5g00545 ACH 18 304 Core Cell Cycle gene family AT1G76540 28.939 4.89e-28 114.0
Cien5g02328 ACH 29 271 Core Cell Cycle gene family AT5G65420 46.914 2.26e-66 209.0
Cien5g02780 . 21 423 Core Cell Cycle gene family AT5G10270 44.444 2.32e-112 345.0
Cien5g02980 ACH 14 288 Core Cell Cycle gene family AT4G34160 54.325 2.12e-102 305.0
Cien5g03326 . 18 361 Core Cell Cycle gene family AT5G10270 54.203 7.78e-123 373.0
Cien5g03380 . 58 255 Core Cell Cycle gene family AT4G03270 31.863 1.08e-24 100.0
Cien5g03532 ACH 21 647 Core Cell Cycle gene family AT1G16330 43.146 1.37e-155 459.0
Cien4g00089 . 59 296 Core Cell Cycle gene family AT4G03270 41.079 1.81e-50 166.0
Cien4g01038 . 11 91 Core Cell Cycle gene family AT5G48820 41.975 3.50e-06 44.3
Cien4g01580 ACH 1 80 Core Cell Cycle gene family AT2G27970 91.463 5.80e-53 162.0
Cien4g01804 . 14 304 Core Cell Cycle gene family AT1G76540 26.316 1.03e-28 113.0
Cien4g02697 . 18 364 Core Cell Cycle gene family AT5G10270 47.727 8.09e-109 333.0
Cien4g02778 ACH 1 353 Core Cell Cycle gene family AT5G43080 58.871 2.36e-150 427.0
Cien4g03097 . 18 383 Core Cell Cycle gene family AT5G10270 45.799 7.01e-104 324.0
Cien3g00786 ACH 99 239 Core Cell Cycle gene family AT5G27620 28.667 1.79e-12 65.1
Cien3g00918 . 7 497 Core Cell Cycle gene family AT1G02970 57.822 0.0 556.0
Cien3g01313 . 156 229 Core Cell Cycle gene family AT2G22490 57.895 9.72e-24 90.1
Cien3g02294 . 97 144 Core Cell Cycle gene family AT2G22490 50.0 2.44e-09 51.2
Cien3g02301 . 17 282 Core Cell Cycle gene family AT5G10270 51.103 7.10e-87 278.0
Cien3g03035 . 8 302 Core Cell Cycle gene family AT3G54180 25.519 1.05e-13 70.5
Cien3g03310 . 11 315 Core Cell Cycle gene family AT1G20930 87.213 0.0 566.0
Cien3g03311 . 11 315 Core Cell Cycle gene family AT1G20930 86.23 0.0 555.0
Cien3g04009 . 1 317 Core Cell Cycle gene family AT5G27620 60.502 2.12e-138 393.0
Cien2g00631 . 1 220 Core Cell Cycle gene family AT5G48820 42.735 2.22e-46 151.0
Cien2g01186 . 1 423 Core Cell Cycle gene family AT2G17620 56.591 5.10e-145 419.0
Cien2g01453 . 7 314 Core Cell Cycle gene family AT4G37630 35.443 2.62e-52 173.0
Cien2g01462 . 12 304 Core Cell Cycle gene family AT1G76540 31.629 2.23e-41 149.0
Cien2g01473 . 14 306 Core Cell Cycle gene family AT1G20930 29.45 5.04e-43 151.0
Cien2g02952 ACH 238 358 Core Cell Cycle gene family AT5G10270 39.669 8.00e-22 92.8
Cien2g02953 . 12 48 Core Cell Cycle gene family AT1G76540 59.459 1.26e-09 52.4
Cien2g03081 ACH 150 179 Core Cell Cycle gene family AT1G49620 63.333 4.95e-06 43.9
Cien2g03154 . 18 357 Core Cell Cycle gene family AT5G10270 52.786 3.54e-118 358.0
Cien2g03171 . 215 247 Core Cell Cycle gene family AT1G20930 81.818 4.30e-10 57.8
Cien2g03724 . 16 459 Core Cell Cycle gene family AT1G80370 50.217 5.59e-142 416.0
Cien2g04279 . 18 286 Core Cell Cycle gene family AT4G34160 49.643 2.94e-84 258.0
Cien2g04310 ACH 161 353 Core Cell Cycle gene family AT5G43080 61.14 9.06e-88 265.0
Cien1g00131 . 1 433 Core Cell Cycle gene family AT5G11300 47.548 1.00e-126 372.0
Cien1g00142 . 3 301 Core Cell Cycle gene family AT3G54180 28.406 5.77e-29 113.0
Cien1g01042 ACH 1 80 Core Cell Cycle gene family AT2G27970 86.25 1.54e-51 154.0
Cien1g01043 . 1 80 Core Cell Cycle gene family AT2G27970 86.25 1.54e-51 154.0
Cien1g03117 ACH 14 280 Core Cell Cycle gene family AT4G34160 52.65 1.07e-94 286.0
Cien1g03138 . 204 352 Core Cell Cycle gene family AT5G43080 46.309 2.24e-43 144.0
Cien1g03166 . 52 282 Core Cell Cycle gene family AT1G70210 43.404 1.12e-58 190.0
Cien1g03462 . 2 309 Core Cell Cycle gene family AT3G54180 81.494 0.0 531.0
Cien1g03473 . 2 309 Core Cell Cycle gene family AT3G54180 81.169 0.0 528.0
Cien1g03524 . 4 143 Core Cell Cycle gene family AT5G02110 35.211 2.03e-20 85.5
Cien1g03525 . 160 279 Core Cell Cycle gene family AT4G34160 31.25 2.15e-10 57.4
Cien1g03558 . 1 445 Core Cell Cycle gene family AT5G06150 51.416 4.75e-152 437.0
Cien1g03795 . 1 294 Core Cell Cycle gene family AT3G48750 37.838 3.63e-69 217.0
Cien1g04161 ACH 99 239 Core Cell Cycle gene family AT5G27620 29.333 7.38e-11 59.7
Cien1g04190 . 1 221 Core Cell Cycle gene family AT5G48820 42.917 2.35e-43 143.0