AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03534 ATGGAGGAGCATCCCGGAGGTGGTGGTGCTACCGATCAGACTAGCAATGGGAAGATGGAGTATACAGAGCACCGATCTCCATCCACCGTTGATGTTAATGATTCTGGTGCGTGGAGACTCGACATCAATAATTTCCGGCTACCGGAAACATCCGCTGCGGACGATAAATCTTCAACTCTCCGCCGCCTGGTGTTCCCTACTCGAAGAACGAAGAGAAAAGTTAAAGCATATTATAAGAAACAAGAAAGCCTCTTTGAGGGGTTCAATGAGATGGAAACAATAGGCAAATCAGGTTCTTTACCAGGAGCTCTAACTGAGGATGAAATGGAAAATCTTGCTAAGAGCGAGCGAACGGCGATCTACGTATCCAACGTAGCTAACTTGATTCTGTTCATTGCTAAACTCTACGCCTCCATTGAGAGCAGATCGTTAGCAGTCATCGCATCAACTCTGGATTCGTTTTTGGATCTGTTATCTGGATTTATTCTATGGTTTACATCAAACGCCATGAGAAACCCTAATCGTTATCGCTATCCAATTGGGAAGAACCGGATGCAACCTGTCGGGATTATCGTTTTTGCATCGGTAATGGCAACTCTCGGTTTCCAAATACTGCTAGAATCTGCCAGAGAAATCCTAGCCGAGACACACCCTAGCAAGAACCATGGTGACGAAGAATGGGTGATTGGAATCATGGTTTCCGTTACCATAGTGAAATTTGTGCTGATGTTGTATTGCCGAAGATTTGAGAACGCAATAGTGAGAGCATACGCGCAGGATCATTTCTTCGATGTCATCACTAATTCCATTGGATTAGCAGCAACTGTCTTAGCCGTACGTTACGATTGGTGGATGGATCCCGTTGGCGCTATAATTATAGCGGTTTATACGATAAATACATGGACAAAGACTGTTATAGAGAACGTACGGTCTTTAATCGGGAGAACAGCTCCACCTGAATTCTTGTCGAAATTGATATACTTGGTATGGAACCACCATGAAGAAATACAACACATTGACACGGTTAGGGCATACACATTCGGGGGTTATTACTTTGTGGAGGTAGACATAGTGTTGCCACGAGATATGATGCTCATCGAGGCGCATAATATTGGTGAAATGTTACAAGAAAAACTAGAGCAATTGGCGGAAGTTGAACGAGCTTTTGTTCATATCGATTTTGAGTTCACTCATACACCCGAACATAAGGGAAAGAATATCCCCAGGACGGACGATCACAACCACCAGACAGACAGACCCACGTGTCTCCATTTACGTGAGGAAGATGATGAACACGCATACACACATTCTTCAACAACAATCGGCAACCCCATGTTCGTTTTACTGGATTAG 1353 44.12 MEEHPGGGGATDQTSNGKMEYTEHRSPSTVDVNDSGAWRLDINNFRLPETSAADDKSSTLRRLVFPTRRTKRKVKAYYKKQESLFEGFNEMETIGKSGSLPGALTEDEMENLAKSERTAIYVSNVANLILFIAKLYASIESRSLAVIASTLDSFLDLLSGFILWFTSNAMRNPNRYRYPIGKNRMQPVGIIVFASVMATLGFQILLESAREILAETHPSKNHGDEEWVIGIMVSVTIVKFVLMLYCRRFENAIVRAYAQDHFFDVITNSIGLAATVLAVRYDWWMDPVGAIIIAVYTINTWTKTVIENVRSLIGRTAPPEFLSKLIYLVWNHHEEIQHIDTVRAYTFGGYYFVEVDIVLPRDMMLIEAHNIGEMLQEKLEQLAEVERAFVHIDFEFTHTPEHKGKNIPRTDDHNHQTDRPTCLHLREEDDEHAYTHSSTTIGNPMFVLLD 450
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03534 450 SUPERFAMILY Cation efflux protein transmembrane domain-like 115 314 IPR027469 -
Cien5g03534 450 Gene3D Cation efflux protein transmembrane domain 117 312 IPR027469 -
Cien5g03534 450 Gene3D Cation efflux protein, cytoplasmic domain 317 394 IPR036837 -
Cien5g03534 450 Pfam Cation efflux family 121 313 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cien5g03534 450 MobiDBLite consensus disorder prediction 400 419 - -
Cien5g03534 450 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 317 393 IPR036837 -
Cien5g03534 450 MobiDBLite consensus disorder prediction 9 32 - -
Cien5g03534 450 FunFam Metal tolerance protein 11 315 395 - -
Cien5g03534 450 Pfam Dimerisation domain of Zinc Transporter 324 393 IPR027470 -
Cien5g03534 450 NCBIfam cation diffusion facilitator family transporter 118 393 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cien5g03534 450 MobiDBLite consensus disorder prediction 1 32 - -
Cien5g03534 450 FunFam Metal tolerance protein 11 119 312 - -
Cien5g03534 450 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 56 403 IPR050291 GO:0008324(PANTHER)|GO:0016020(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03534 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:34205539 Cien5g03534 Cien-Chr5:81210298 dispersed
Cien Cien-Chr5:81210298 Cien9g01767 Cien-Chr9:28299573 dispersed
Cien Cien-Chr5:81210298 Cien3g03569 Cien-Chr3:91353750 transposed