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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03549 ATGGGGAAGAAGAAACAGAAGCAGAAGGTAGTACTGCCACCAGAGCTTCCACCAGATGTTCCCGAGGATGAAATTGAAGTCTCAGACGAGGATTTAGACTTTGTCAATAAAAACCAAGAGTATGCTGGCTTTGTATCGAAATTGGATACTCAATCAATTACCAGACATATCAACCGTGTTGCTGATGTGAAAGAAGATGCTCTTGAGTCTTTGTATGAGAAACGATCTAGAAAGAAATCATTAGCTACTGAAAATATTCAACATGAAGTTGACCCTGTAGATGCTCTCCCTGTGAAGACCTTAGATGGACAAGTCTATTACAGGACAGTGTCAAAGGGTCCAAATAAATTAGCCAATGCACAGAATGAAGATGAAACGGTCGGTGAAAATGACGATATAGCCCGTGACAATGGTGTTGTGAAGTTGACAAAAGCAGAAAAAAGAGCAAAGCTTAAAAAGTTGAGAAAAGAAGCAAAGAAACAAGGGACACCAGTGACAGAATTAGAGGAAGTGCAACAAAGCTCTCAAGCCGAAGTTTTGGCTGAGGTGGAAAAAGATCTCTCAGTTGAAGAAGCCAATGAGAAAAAGAAGTTTAGGCTTGCTGAACTTGGAACAGCAATGCTTACAGATCCTGAAGGAAATATTAAATCTTTAAAAGAAATGCTACAAATTTGTAAAGATGGAGATCAGGAAATTTCAATACTTGGTCTAAAGTCTTTGTTAGCTGTTTTCAAAGACATCATACCAGGAAACCGTATTAGGCTACCTACCGATAAAGAGCTAGCAATGGTTGTATCAAAAGACGTCAAGAAAACCCGTTTTTATGAATCCACACTTTTAACTGTGTACAAGGCATACCTCCAAAAGCTAATGGGATTGGAAAAAGCACCTGGTTTTAAACGTGTGGCCATTCGTTGCATTTGTACTCTTTTGGAAGCAAACCCGCGTTTTAATTTTCGTGAAAGTTTATTGGGAATTGTCATAAAGAATATTAGCTCCACAGATGATGTCATCAGGAAACTTTGTTGTAACACAATTAAGTCACTTTTCACAAATGAGGGAAAGCATGGTGGTGAAGTTACTGTGGAGGCTGTTCAACTTATTGCTAATCTTGTAAAAGCCCATGATTGTGATTTACATCCTGATTCCGTTGAGGTTTTCATGTCGCTCTCGTTTGATGAGGATCTTAGGAAGCCTGAAACTCCTAAACCAGACAATAAAAGCAAAAAAAAGTATTTTAAAAAAGGAAGAAGAAATGAGGATTCAAATCAAGTACCTGCTAGTGATAAAAAGAAAAATAAACAAGAAATGATGTCAAAGACTAGAGAAGAAGTCAAAGCTGAATTCATGGCTGCATCATTTGCACAAGATGTAATGGAAAAAAGAAGGATACAATCTGATACTCTTTCAGCCGTTTTCCAAACATATTTCCGTATTTTAAAGCATACCATGCACTCAGGATCAGAAGAAAATGGATCGATAACTGGTCCATTTGGGGAGCATCCACTTCTTGCTCCATGTTTGAATGGAATCGGGAAATTTTCTCATTTAATCGATTTGGATTTCATGGCTGATCTAATGAACTATCTTAGAAAGCTTGCTGGCGGAACCAGTGATTCCAATGGAGGAATCACTGATTCCAATCTTCTAAGCAATTTGACCGTGTCTGAACGCTTGAGATGCTGCATAGTCGCTTTCAAAGTGATGAGGAGCAACCTTGACGCCTTAAATGTTGATTTACAAGACTTCTTCATTCAACTATATAATCTCATACTTGAATACAGACCTGGGAGAGACCAAGGGGAAGTTTTGGCTGAAGCTATGAAGATAATGCTATGTGATGATAGACAACATGACATGCAACGAGCTGCTGCTTTTATTAAACGTTTGGCTTCCTTCTCTTTGTGCTTTGGTGCTGCAGAATCCATGGCTGCATTGGTTACATTAAAGCATCTCCTTCAAAAAAACGTCAAATGCCGTGATTTATTAGAGAATGACGCGGGAGGTGGCTCGCTTTCAGGTTCTATCGCGAAATATCAACCGTATGCTACGGATCCAAGCCTAAGTGGCGCTTTTGCAACGGTTCTTTGGGAGCTAACACTTGTATCAAAACATTATCATCCAACCGTGTCAACAATGGCTTCCGGGATTTCAACTATTACAAATGCACACGATCAAGTTTACCGCGCAAATGTCTCTCCTCAACAAGCTTTCATGGACATGAAGGTTGACCAGGAGAGTTTTGTTCCAAAAAGCGGTCAAAAGTCAAACAAGAGGAAGAGGGGCGGCAAGCCGTCACCTCCCGTGGCGGTAGGTGGTGGAGCGGTGGTGGATGAGGAGGTGGTGAGGAGTAAACTGTCGGAGCATTTTTTGCTTGTGAATGAGATGGAGGAAAATGAAAGGTTGAGACGGGAATTGGAACGGACGAAATTAGGGTTGGAAGTTTATAAAGAGTATAAGAAGCAAAAGAAACAGAAAACTAAATAG 2487 40.05 MGKKKQKQKVVLPPELPPDVPEDEIEVSDEDLDFVNKNQEYAGFVSKLDTQSITRHINRVADVKEDALESLYEKRSRKKSLATENIQHEVDPVDALPVKTLDGQVYYRTVSKGPNKLANAQNEDETVGENDDIARDNGVVKLTKAEKRAKLKKLRKEAKKQGTPVTELEEVQQSSQAEVLAEVEKDLSVEEANEKKKFRLAELGTAMLTDPEGNIKSLKEMLQICKDGDQEISILGLKSLLAVFKDIIPGNRIRLPTDKELAMVVSKDVKKTRFYESTLLTVYKAYLQKLMGLEKAPGFKRVAIRCICTLLEANPRFNFRESLLGIVIKNISSTDDVIRKLCCNTIKSLFTNEGKHGGEVTVEAVQLIANLVKAHDCDLHPDSVEVFMSLSFDEDLRKPETPKPDNKSKKKYFKKGRRNEDSNQVPASDKKKNKQEMMSKTREEVKAEFMAASFAQDVMEKRRIQSDTLSAVFQTYFRILKHTMHSGSEENGSITGPFGEHPLLAPCLNGIGKFSHLIDLDFMADLMNYLRKLAGGTSDSNGGITDSNLLSNLTVSERLRCCIVAFKVMRSNLDALNVDLQDFFIQLYNLILEYRPGRDQGEVLAEAMKIMLCDDRQHDMQRAAAFIKRLASFSLCFGAAESMAALVTLKHLLQKNVKCRDLLENDAGGGSLSGSIAKYQPYATDPSLSGAFATVLWELTLVSKHYHPTVSTMASGISTITNAHDQVYRANVSPQQAFMDMKVDQESFVPKSGQKSNKRKRGGKPSPPVAVGGGAVVDEEVVRSKLSEHFLLVNEMEENERLRRELERTKLGLEVYKEYKKQKKQKTK 828
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03549 828 Coils Coil 792 812 - -
Cien5g03549 828 MobiDBLite consensus disorder prediction 746 773 - -
Cien5g03549 828 MobiDBLite consensus disorder prediction 397 442 - -
Cien5g03549 828 MobiDBLite consensus disorder prediction 1 23 - -
Cien5g03549 828 Pfam CBF-Mak21 family 559 714 IPR005612 -
Cien5g03549 828 SUPERFAMILY ARM repeat 219 592 IPR016024 -
Cien5g03549 828 Gene3D - 216 483 IPR011989 -
Cien5g03549 828 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 4 761 IPR016903 GO:0003682(PANTHER)|GO:0005730(PANTHER)|GO:0006270(PANTHER)
Cien5g03549 828 MobiDBLite consensus disorder prediction 415 442 - -
Cien5g03549 828 Pfam Nucleolar complex-associated protein 196 286 IPR011501 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03549 K14834 nucleolar complex protein 3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr3:94457061 Cien5g03549 Cien-Chr5:81407235 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cien9g00082 . 4 534 Core DNA Replication Machinery family AT4G29910 59.218 0.0 617.0
Cien9g00478 . 1 361 Core DNA Replication Machinery family AT5G26680 84.211 0.0 646.0
Cien9g00542 . 1 264 Core DNA Replication Machinery family AT5G26680 27.138 3.31e-20 92.0
Cien9g00719 . 1 774 Core DNA Replication Machinery family AT5G46280 68.408 0.0 1067.0
Cien9g01163 . 1 182 Core DNA Replication Machinery family AT3G55490 63.187 5.60e-84 244.0
Cien9g01256 . 166 214 Core DNA Replication Machinery family AT4G14700 44.898 1.34e-08 55.1
Cien9g02127 . 749 888 Core DNA Replication Machinery family AT5G22010 36.986 1.73e-18 78.2
Cien9g02333 . 681 720 Core DNA Replication Machinery family AT5G67100 58.537 2.01e-08 47.4
Cien9g02408 ACH 245 341 Core DNA Replication Machinery family AT4G14700 32.323 4.58e-10 57.0
Cien9g02534 . 178 378 Core DNA Replication Machinery family AT2G42120 42.786 9.97e-36 126.0
Cien8g00412 . 826 1288 Core DNA Replication Machinery family AT1G08840 29.865 1.16e-46 176.0
Cien8g00934 . 1 1294 Core DNA Replication Machinery family AT1G08840 55.192 0.0 1411.0
Cien8g01059 . 9 287 Core DNA Replication Machinery family AT1G21690 23.49 8.18e-14 72.4
Cien8g01332 . 1640 1868 Core DNA Replication Machinery family AT1G08260 43.668 8.13e-52 183.0
Cien8g01740 . 17 396 Core DNA Replication Machinery family AT2G20980 44.836 7.61e-104 309.0
Cien8g01926 . 3 311 Core DNA Replication Machinery family AT1G21690 25.568 2.92e-15 76.3
Cien8g02270 . 739 783 Core DNA Replication Machinery family AT5G67100 53.333 1.92e-07 48.1
Cien8g02455 . 2 349 Core DNA Replication Machinery family AT5G27740 38.527 1.10e-81 262.0
Cien8g02474 . 179 359 Core DNA Replication Machinery family AT2G42120 55.801 8.24e-58 184.0
Cien8g02586 . 58 776 Core DNA Replication Machinery family AT1G08130 35.66 5.07e-168 519.0
Cien7g00209 . 12 332 Core DNA Replication Machinery family AT1G63160 92.212 0.0 620.0
Cien7g00395 . 1 410 Core DNA Replication Machinery family AT2G01120 62.195 0.0 529.0
Cien7g00818 . 4 620 Core DNA Replication Machinery family AT1G67630 55.429 0.0 685.0
Cien7g00821 . 1 128 Core DNA Replication Machinery family AT5G45400 34.328 1.57e-10 56.6
Cien7g00898 . 20 928 Core DNA Replication Machinery family AT1G44900 75.463 0.0 1383.0
Cien7g01015 . 1 369 Core DNA Replication Machinery family AT1G77470 76.203 0.0 573.0
Cien7g01197 . 422 460 Core DNA Replication Machinery family AT2G29680 53.846 1.14e-07 48.1
Cien7g01797 . 6 218 Core DNA Replication Machinery family AT1G21690 22.901 4.03e-08 53.5
Cien7g02856 . 1526 1764 Core DNA Replication Machinery family AT1G08260 50.209 1.65e-71 235.0
Cien7g03342 . 19 264 Core DNA Replication Machinery family AT5G26680 30.522 2.23e-19 89.4
Cien6g00647 ACH 1014 1294 Core DNA Replication Machinery family AT1G08840 29.352 2.84e-19 92.4
Cien6g00801 . 888 1283 Core DNA Replication Machinery family AT1G08840 30.269 1.49e-37 152.0
Cien6g01193 . 1642 1762 Core DNA Replication Machinery family AT1G08260 38.843 6.46e-20 83.2
Cien6g01196 . 492 664 Core DNA Replication Machinery family AT4G19130 45.665 5.94e-42 151.0
Cien6g01200 . 1 207 Core DNA Replication Machinery family AT2G06510 38.43 8.16e-36 132.0
Cien5g00267 . 56 164 Core DNA Replication Machinery family AT2G24490 28.906 1.81e-08 50.4
Cien5g00449 . 879 1292 Core DNA Replication Machinery family AT1G08840 27.848 6.97e-38 152.0
Cien5g00613 . 20 463 Core DNA Replication Machinery family AT3G54710 30.065 3.97e-38 144.0
Cien5g01331 . 117 172 Core DNA Replication Machinery family AT2G25100 73.214 1.96e-22 87.0
Cien5g01348 . 882 959 Core DNA Replication Machinery family AT5G67100 73.418 6.15e-32 120.0
Cien5g01360 . 26 500 Core DNA Replication Machinery family AT1G07270 58.248 0.0 564.0
Cien5g02117 . 750 890 Core DNA Replication Machinery family AT5G22010 37.063 2.69e-17 75.5
Cien5g02133 . 362 547 Core DNA Replication Machinery family AT1G44900 73.656 1.60e-83 276.0
Cien5g02175 . 482 824 Core DNA Replication Machinery family AT5G63960 77.326 0.0 532.0
Cien5g02562 . 11 286 Core DNA Replication Machinery family AT1G21690 26.073 1.57e-14 74.7
Cien5g02838 . 934 1289 Core DNA Replication Machinery family AT1G08840 26.617 7.18e-24 106.0
Cien5g03549 . 1 801 Core DNA Replication Machinery family AT1G79150 57.038 0.0 879.0
Cien4g00033 . 245 341 Core DNA Replication Machinery family AT4G14700 30.303 6.14e-09 53.5
Cien4g00787 . 1 275 Core DNA Replication Machinery family AT2G24490 41.135 1.95e-70 221.0
Cien4g01256 . 393 610 Core DNA Replication Machinery family AT5G22010 27.309 4.84e-14 74.7
Cien4g01563 . 154 790 Core DNA Replication Machinery family AT1G08130 73.312 0.0 1007.0
Cien4g02163 . 33 241 Core DNA Replication Machinery family AT1G77470 27.511 4.59e-10 59.7
Cien4g02853 . 12 363 Core DNA Replication Machinery family AT2G37560 65.625 1.81e-176 497.0
Cien4g03065 . 1 601 Core DNA Replication Machinery family AT5G08020 67.921 0.0 886.0
Cien4g03290 . 2 957 Core DNA Replication Machinery family AT1G77320 45.26 0.0 784.0
Cien4g03395 ACH 1014 1294 Core DNA Replication Machinery family AT1G08840 29.392 5.41e-18 88.2
Cien3g00111 . 1 727 Core DNA Replication Machinery family AT2G07690 78.202 0.0 1165.0
Cien3g00501 . 1 106 Core DNA Replication Machinery family AT4G18590 62.264 6.55e-48 150.0
Cien3g00791 . 1 596 Core DNA Replication Machinery family AT3G25100 72.167 0.0 853.0
Cien3g00954 . 1097 1322 Core DNA Replication Machinery family AT4G02110 71.366 4.47e-114 384.0
Cien3g00963 . 1 716 Core DNA Replication Machinery family AT4G02060 82.542 0.0 1246.0
Cien3g01256 . 64 216 Core DNA Replication Machinery family AT2G42120 64.706 9.62e-61 197.0
Cien3g01848 . 1 220 Core DNA Replication Machinery family AT5G49010 57.08 9.21e-88 256.0
Cien3g02188 . 1 444 Core DNA Replication Machinery family AT1G67320 66.45 0.0 653.0
Cien3g02203 . 117 169 Core DNA Replication Machinery family AT2G25100 75.472 1.23e-22 85.9
Cien3g02687 . 1 274 Core DNA Replication Machinery family AT1G26840 65.343 4.46e-128 366.0
Cien3g03132 . 1018 1269 Core DNA Replication Machinery family AT1G08840 31.698 2.29e-18 89.0
Cien3g03866 . 1 801 Core DNA Replication Machinery family AT1G79150 57.073 0.0 879.0
Cien3g04144 . 68 291 Core DNA Replication Machinery family AT2G42120 57.143 1.02e-77 240.0
Cien2g00003 . 4 326 Core DNA Replication Machinery family AT1G21690 25.41 1.62e-22 97.8
Cien2g00198 . 18 526 Core DNA Replication Machinery family AT5G22110 61.328 0.0 641.0
Cien2g01140 . 1141 1267 Core DNA Replication Machinery family AT1G08840 30.216 8.46e-10 61.2
Cien2g01145 . 1015 1267 Core DNA Replication Machinery family AT1G08840 27.798 5.81e-19 90.9
Cien2g01985 . 374 481 Core DNA Replication Machinery family AT5G63960 73.148 1.31e-50 175.0
Cien2g02007 . 1 209 Core DNA Replication Machinery family AT3G12530 59.809 6.98e-90 261.0
Cien2g02873 . 141 251 Core DNA Replication Machinery family AT5G26680 36.937 9.35e-13 70.5
Cien2g02889 . 1127 1245 Core DNA Replication Machinery family AT4G02110 30.645 1.59e-06 49.3
Cien2g03029 . 111 199 Core DNA Replication Machinery family AT4G02110 37.778 1.27e-13 71.6
Cien2g03097 . 11 1522 Core DNA Replication Machinery family AT5G67100 57.957 0.0 1735.0
Cien2g03784 . 1014 1289 Core DNA Replication Machinery family AT1G08840 29.139 1.42e-21 101.0
Cien2g03848 . 134 163 Core DNA Replication Machinery family AT2G01120 63.333 4.56e-07 43.9
Cien2g04370 . 1 339 Core DNA Replication Machinery family AT1G21690 80.826 0.0 575.0
Cien1g00693 . 9 764 Core DNA Replication Machinery family AT3G09660 65.561 0.0 1004.0
Cien1g00993 . 1 2156 Core DNA Replication Machinery family AT1G08260 68.642 0.0 3087.0
Cien1g01421 . 888 1283 Core DNA Replication Machinery family AT1G08840 30.562 4.36e-38 154.0
Cien1g01547 . 1 831 Core DNA Replication Machinery family AT5G44635 73.293 0.0 1257.0
Cien1g02138 . 1017 1047 Core DNA Replication Machinery family AT2G27120 64.516 7.60e-07 42.7
Cien1g02476 . 1 636 Core DNA Replication Machinery family AT2G06510 66.719 0.0 884.0
Cien1g02798 . 1 201 Core DNA Replication Machinery family AT1G80190 60.199 4.28e-88 256.0
Cien1g02913 . 336 574 Core DNA Replication Machinery family AT5G22010 22.526 1.18e-09 60.8
Cien1g03027 . 1 847 Core DNA Replication Machinery family AT2G16440 73.059 0.0 1229.0
Cien1g03032 ACH 245 341 Core DNA Replication Machinery family AT4G14700 27.273 2.28e-08 52.0
Cien1g03784 ACH 1 437 Core DNA Replication Machinery family AT2G42120 76.888 0.0 716.0