AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cien5g03589 | ATGAAAGAGAGCAGTACTAGTGGTGGCGCCGGAAGAAAACAAGGGGCGGCGTCGCCCTGTGCCGCCTGCAAGCTTCTGCGGAGGAGATGTTCTCAAGATTGTGTTTTTGCTCCCTACTTCCCCGCCGACGAGCCTCACAAGTTCGCCAGTGTTCATAAGGTGTTCGGTGCTAGCAATGTCAACAAGATGCTCCAGGAATTACCCGAACACCATAGAGGTGATGCGGTGAGCTCGATGGTGTATGAGGCAAATGCTAGAATCAGGGATCCAGTCTATGGCTGTGTGGGCGCCATATCATCCCTACAACAACAGATAGACGTACTTCAAGCACAACTGGCAGTGTCACAGGCTGAAGTTGTTCACATGCGCATGCGTCAGTTCTCTTCAAGTCCCATCAATCAGTCGCCAGAAAATATCTCGCCACCATCTCGACACCACCAATCACAGACATCAACCAGGTCCCTTTTTGGCATGGACATGGTGGTTGACCAAACTAATATGGTTATGGGGGAGTCTTTATGGTCTTCATGCAACTAG | 537 | 50.65 | MKESSTSGGAGRKQGAASPCAACKLLRRRCSQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHHRGDAVSSMVYEANARIRDPVYGCVGAISSLQQQIDVLQAQLAVSQAEVVHMRMRQFSSSPINQSPENISPPSRHHQSQTSTRSLFGMDMVVDQTNMVMGESLWSSCN | 178 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cien5g03589 | 178 | Pfam | Lateral organ boundaries (LOB) domain | 19 | 116 | IPR004883 | - | |
| Cien5g03589 | 178 | Coils | Coil | 98 | 118 | - | - | |
| Cien5g03589 | 178 | ProSiteProfiles | LOB domain profile. | 18 | 119 | IPR004883 | - | |
| Cien5g03589 | 178 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 17 | 147 | - | - | |
| Cien5g03589 | 178 | MobiDBLite | consensus disorder prediction | 128 | 151 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cien5g03589 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cien | Cien-Chr5:23639661 | Cien5g03589 | Cien-Chr5:82184644 | dispersed | |
| Cien | Cien-Chr5:82184644 | Cien7g02449 | Cien-Chr7:36807813 | dispersed | |
| Cien | Cien-Chr5:82184644 | Cien3g03538 | Cien-Chr3:90942485 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cien9g00163 | ACH | 9 | 210 | AS2 family | AT4G00210 | 49.505 | 3.46e-60 | 185.0 | |
| Cien8g00469 | . | 24 | 115 | AS2 family | AT1G06280 | 64.13 | 4.97e-40 | 135.0 | |
| Cien8g00785 | . | 37 | 204 | AS2 family | AT2G45420 | 61.31 | 1.21e-63 | 197.0 | |
| Cien8g02923 | . | 1 | 247 | AS2 family | AT5G66870 | 54.753 | 1.92e-79 | 243.0 | |
| Cien8g03154 | . | 1 | 106 | AS2 family | AT3G26660 | 64.151 | 6.18e-51 | 156.0 | |
| Cien8g03220 | . | 27 | 140 | AS2 family | AT3G47870 | 56.034 | 2.10e-37 | 132.0 | |
| Cien8g03221 | . | 35 | 141 | AS2 family | AT3G47870 | 46.296 | 3.32e-31 | 114.0 | |
| Cien8g03222 | . | 27 | 137 | AS2 family | AT3G47870 | 43.089 | 3.27e-28 | 109.0 | |
| Cien7g02000 | . | 1 | 246 | AS2 family | AT3G49940 | 54.582 | 2.00e-78 | 234.0 | |
| Cien7g02088 | . | 1 | 250 | AS2 family | AT5G66870 | 57.993 | 1.69e-87 | 263.0 | |
| Cien7g02449 | . | 15 | 156 | AS2 family | AT3G27650 | 69.718 | 7.70e-71 | 209.0 | |
| Cien7g03311 | ACH | 9 | 213 | AS2 family | AT4G00210 | 45.631 | 2.29e-52 | 166.0 | |
| Cien7g03312 | . | 20 | 205 | AS2 family | AT4G00220 | 62.437 | 6.66e-74 | 223.0 | |
| Cien6g00802 | . | 63 | 147 | AS2 family | AT5G66870 | 54.348 | 2.54e-24 | 97.8 | |
| Cien5g00330 | . | 7 | 245 | AS2 family | AT2G42430 | 55.417 | 1.00e-79 | 236.0 | |
| Cien5g00331 | ACH | 11 | 146 | AS2 family | AT3G58190 | 69.853 | 2.09e-65 | 200.0 | |
| Cien5g00620 | . | 3 | 199 | AS2 family | AT1G65620 | 63.319 | 4.67e-78 | 231.0 | |
| Cien5g01409 | . | 3 | 193 | AS2 family | AT2G30130 | 68.912 | 4.78e-87 | 251.0 | |
| Cien5g02039 | . | 1 | 143 | AS2 family | AT5G06080 | 54.545 | 2.12e-50 | 159.0 | |
| Cien5g03589 | . | 1 | 171 | AS2 family | AT1G31320 | 68.156 | 2.98e-71 | 211.0 | |
| Cien4g01439 | . | 2 | 83 | AS2 family | AT5G63090 | 87.805 | 9.00e-47 | 152.0 | |
| Cien4g01786 | . | 1 | 253 | AS2 family | AT3G03760 | 55.385 | 1.10e-73 | 223.0 | |
| Cien4g02260 | ACH | 35 | 155 | AS2 family | AT3G13850 | 69.355 | 3.00e-56 | 183.0 | |
| Cien4g02616 | . | 1 | 118 | AS2 family | AT5G63090 | 80.508 | 3.94e-66 | 199.0 | |
| Cien4g02753 | . | 1 | 139 | AS2 family | AT4G37540 | 58.904 | 8.09e-56 | 175.0 | |
| Cien4g03178 | . | 27 | 328 | AS2 family | AT3G47870 | 38.361 | 9.83e-57 | 184.0 | |
| Cien2g01808 | . | 3 | 116 | AS2 family | AT2G30130 | 88.596 | 2.45e-72 | 215.0 | |
| Cien2g02367 | . | 3 | 199 | AS2 family | AT1G65620 | 64.574 | 6.42e-75 | 223.0 | |
| Cien2g03075 | . | 4 | 247 | AS2 family | AT5G66870 | 52.191 | 6.18e-76 | 232.0 | |
| Cien1g00758 | . | 1 | 160 | AS2 family | AT3G03760 | 61.875 | 1.11e-65 | 201.0 | |
| Cien1g02533 | . | 1 | 107 | AS2 family | AT3G26660 | 62.617 | 3.90e-51 | 157.0 | |
| Cien1g02666 | ACH | 35 | 208 | AS2 family | AT3G13850 | 54.359 | 3.48e-55 | 180.0 | |
| Cien1g04310 | ACH | 1 | 240 | AS2 family | AT2G42440 | 46.538 | 3.86e-69 | 210.0 | |
| Cien1g04311 | . | 10 | 245 | AS2 family | AT2G42430 | 52.966 | 2.90e-69 | 209.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Cien | LOB | 4e-43 | No_clan | TF | LOB |