AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03600 ATGCCAATTGCCGAGTACTTAAACCCATATCCTCAACGGCATCCACTTCCGATCTCTTTCTCCCCAAAATCTATCTCGATGGAGACCTTGGCTCCCTCAAATCAAACCCTAATTTCTGCTAATTTCAGCTCCAGATCTGTTTCCGCCACCGGATTTTCTCTACCATGCCTTAAATCTCCTGTGCTAGGTCAACGGCGCAAACTCACCTTCATTAAAGCCTCCGTTGCCGTTGAGCAACAGACGCAGAAAAAGGTCGCCCTTATCCGAATTGGCACCAGAGGAAGTCCACTAGCCCTTGCACAAGCTTACGAGACGCGAGACAAACTCATAGCTTCAAGTAGTGAGCTAGCAGAAGATGGAGCCATCGAGATTGTGGTGATCAAAACCACAGGCGACAAAATCCTGAGTCAACCTCTCGCAGATATTGGTGGAAAGGGTCTATTCACTAAAGAAATAGATGAAGCACTTCTCAACAGTGAAATCGACATTGCTGTTCATTCCATGAAAGACGTCCCTACTTACCTCCCTGATAAAACAATCTTACCCTGCAATCTTCCACGTGAAGATGTTCGTGATGCATTCATTTCCTTAAATGCAAGTTCATTAGCCGATCTTCCATCTGGAAGCGTTGTTGGTACCGCATCTCTTCGAAGAAAATCTCAACTTCTCCACAGATATCCATCACTCTCTGTGCTTGAAAATTTCAGAGGGAATGTGCAAACCAGGTTAAAGAAACTAAACGATGGAGTTGTTCAAGCAACATTATTAGCATTAGCTGGATTGAAACGATTAAGCATGACTGAACATGTGAGTTCAATACTTTCGATTGATGACATGCTTCCAGCTGTTGCACAAGGTGCAATTGGAATTGCGTGTAGAAGTGATGATGATATAATGGCTAATTACATAGCCAAATTGAACCATGAAGAAACAAGATTAGCGGTTGCATGTGAGCGCGCTTTTCTGTTGACACTTGATGGGTCTTGTAGGACACCGATAGCTGGATACGCGTGTAGGGACGAGGACGGTAATTGTCTGTTTAGAGGATTGGTAGCCTCGCCAGATGGCACTAAAGTACTTGAGACTTCGAGAAAGGGAGCGTATGCGTATGAGGATATGATGCTGATGGGGAAGGATGCTGGTGAGGAGCTTTTATCGCGTGCGGGGCCTGGTTTTTTTAATAGTTGA 1188 44.78 MPIAEYLNPYPQRHPLPISFSPKSISMETLAPSNQTLISANFSSRSVSATGFSLPCLKSPVLGQRRKLTFIKASVAVEQQTQKKVALIRIGTRGSPLALAQAYETRDKLIASSSELAEDGAIEIVVIKTTGDKILSQPLADIGGKGLFTKEIDEALLNSEIDIAVHSMKDVPTYLPDKTILPCNLPREDVRDAFISLNASSLADLPSGSVVGTASLRRKSQLLHRYPSLSVLENFRGNVQTRLKKLNDGVVQATLLALAGLKRLSMTEHVSSILSIDDMLPAVAQGAIGIACRSDDDIMANYIAKLNHEETRLAVACERAFLLTLDGSCRTPIAGYACRDEDGNCLFRGLVASPDGTKVLETSRKGAYAYEDMMLMGKDAGEELLSRAGPGFFNS 395
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03600 395 FunFam Porphobilinogen deaminase, chloroplastic 192 289 - -
Cien5g03600 395 Gene3D - 88 297 - -
Cien5g03600 395 PRINTS Porphobilinogen deaminase signature 317 334 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Cien5g03600 395 PRINTS Porphobilinogen deaminase signature 230 247 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Cien5g03600 395 PRINTS Porphobilinogen deaminase signature 131 151 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Cien5g03600 395 PRINTS Porphobilinogen deaminase signature 210 227 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Cien5g03600 395 PRINTS Porphobilinogen deaminase signature 162 181 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Cien5g03600 395 PANTHER PORPHOBILINOGEN DEAMINASE 84 393 IPR000860 GO:0004418(InterPro)|GO:0004418(PANTHER)|GO:0005737(PANTHER)|GO:0006783(PANTHER)|GO:0033014(InterPro)
Cien5g03600 395 Pfam Porphobilinogen deaminase, dipyromethane cofactor binding domain 88 299 IPR022417 GO:0004418(InterPro)|GO:0033014(InterPro)
Cien5g03600 395 Pfam Porphobilinogen deaminase, C-terminal domain 313 385 IPR022418 GO:0004418(InterPro)|GO:0033014(InterPro)
Cien5g03600 395 Gene3D - 308 394 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
Cien5g03600 395 NCBIfam hydroxymethylbilane synthase 88 387 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Cien5g03600 395 Hamap Porphobilinogen deaminase [hemC]. 87 387 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Cien5g03600 395 FunFam Porphobilinogen deaminase 308 395 - -
Cien5g03600 395 SUPERFAMILY Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 307 394 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
Cien5g03600 395 FunFam Porphobilinogen deaminase 88 191 - -
Cien5g03600 395 SUPERFAMILY Periplasmic binding protein-like II 87 305 - -
Cien5g03600 395 CDD PBP2-PBGD-1 87 366 - -
Cien5g03600 395 ProSitePatterns Porphobilinogen deaminase cofactor-binding site. 318 334 IPR022419 GO:0004418(InterPro)|GO:0018160(InterPro)|GO:0033014(InterPro)
Cien5g03600 395 Gene3D - 189 289 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03600 K01749 hydroxymethylbilane synthase [EC:2.5.1.61]