AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03657 ATGGCTTCTCCTGGAAATCAAAATCAACAACCAGGTGGAGGTCCATTTGATGTTCAAAGATTGTTCAACCCTTCTTCTTCACCACCACCAATCACAACAACCCTCCAAAACCCTAACCATCCTTATCCTCCTCCATCTACCGCCGCTTCTTATCCTCCACCGACCGTCACCGGCGGCCCTTACTCTTACCTCCCTCCTCAAACCAACCCTCTTTTCCACCATCAATTCCATATCCCACCGCCCCCTTTCCACCCTCAACAACAACCAGACAATCATTTGCCTTCTAATTTGCAACATCAGCGATCACTTCCTTATCCTACATCCCCTCTTCAACCTCCTAGCCCTAACAACACGAACCCTAACCATGGAGCTCGACTCATGGCCCTTTTAAGCGCCCCACCGCCTTCCATTCCCGATATTCCTTCCCAATCATCCATTCCTTTACCTAACCCTATGCTCCCTTCATCAACCGGTCCATCGCGTATGCCGAGCAGTAAGCTACCAAAAGGACGACATCTAGTCGGCGATCGCGTTGTGTATGACATAGATGTTAGGTTGCCTGGAGAGATTCAGCCCCAACTTGAGGTCACTCCCATCACTAAGTATGGTTCCGATCCTTGTCTGGTGGTCGGTCGTCAGATTGCTGTTAATAAGACGTATATATGTTATGGTTTGAAACCTGGAACTATCAGAGTTCTTAATATAAATACTGCATTAAGATCTCTGCTCAAAGGTCTTGCTCAGAGGGTTACAGATATGGCTTTCTTCGCTGAAGATGTTCACGTTTTAGCCAGTGCAAGCATGGATGGACGAGTTTATGTGTGGAAGATTACAGAAGATCCTGATGAAGATGATAAGCCACAAATCACAGGAAAGACAGTCACCGCCGTCCAAATTCTGGGAGAAGCAGAACCTGTTCGTCCTCGAGTTTGTTGGCACTGCCATAAACAAGAGGTTCTTGTAGTTGGAATTGGAAACCGTATACTTAGATTTGACACTACAAAGATTGGGAGAGGTGAATCATACTCTGCAGATGAACCTCTCAAATGCCACGTGGATAAGTTGATTGATGGAATTCAATTTGTTGGTAAACATGATGGTGAAGTGACAGATTTATCAATGTGTCAATGGATGACCACTCGTTTGGTTTCTGCTTCAGTAGATGGAACGATAAAAATCTGGGAAGATCGCAAGTCATCTCCGATTGCAATATTGAGACCACACGATGGTCTTCCGGTCAACTCTGTTACATTCTTAACCGCCCCTCATCGCCCAGATCACATCATACTTATCACCGGGGGTCCACTGAATCGCGAAATGAAAATATGGGTATCAGAAAGTGAAGAAGGGTGGTTGCTTCCTAGTGATGCTGACTCATGGCATTGTACTCAAGCATTGGAATTGAAGAGTTCTGAAACAAGAAGCGAAGATTCCTTCTTTAATCAAGTTGTTGCATTATCTAATTCCGGTCTTTTATTACTAGCAAATGCTAAAAAGAATGCAATATATGCTGTCCACCTGGATTACGGTCCAAACCCGGAAACCACTCGTATGGATTACATTGCAGAATTCACTGTGACTATGCCAATATTAAGCTTTACTGGCACTAGTGATATTTTGTCCCATGGGGACCACATTGTCCAGGTGTATTGTGTCCAGACACAAGCCATTCAACAATATGCTTTGGACTTATCCCAATGCCTACCACCTCCATTGGGCGCAGAAGTTTTTACAGTTCCGGAACCTTCCGGAAGCAAATCGGATGACATGCCTTTGACGGAAGCTTCCATTAACGAGACCGATATTTCCTGTATTGTGTCACCGACAGTTCCTCCAAGTCCCAAGTTTGCTAGAGACGTTTCTGACATGAGAAGTCCATCTGGCGGTTTTGAGCCACGTCAGCAAGTGAACGGTTATGGTGATCAGAAGATTCTAGAAACTTCCAATTCAAATTTGTCTAATGTGACCTCGCTGGATGATGATGTAAGGGCTGATGAGAGTAAAGTTGTTAAAGACGATCGAACGGTTAAATTTATGCGTCCAACTCATTTGGTAACACCTTCTGAATTGATGGCCACGTTATCAACTGAAGTAAATAATATTACTGAGAATACACATGATGTGGCGGTCAACCCCGATACACAGAATGCTGAGGTGGAGGTTAAGGTTGTGGGCGAAATGGGAATGAGTCAAAATGCTGAAGTGGCGAATGAAAAGTCAAAATTATTCTCGTCACAGGCATCGGGACTCGGGATCGAAATGGCACGGGAAAGTTACGAGTCTAAACAACTTGATGACATAACAGATCAAACTTTAGATGCTCAGGATGATGTTCAAGACATGGAAATTGAGACGTCTGTCCCTGTTGGTCCCACATCAAAATCAAAAAAGAAAAAGGGAAAGAATGCTCAAACAGCGGGCCCAAGTGTGTTAAAGTCAACTGATTCATCTGATGAAATAGGTGTGGGTTTGAGTATGAGCATCCTTTCACAAATTCAGTCAATGCAAGAAACAATTGCTCAGATTTTGACCAGTCAAAAGGAAATCCAGAAGCAGATTCCGGTGGTGGTTGCGGGCCCGGTCACAAAAGAAGGAAAAAGAATCGAGGCGGGAATTGTAAAAACCATGGAGAAAATCCATAAAGCAAATTCTGATGCTTATGTGGCACGTTGTCAAGAAGAGTTTGCGAAACAGGAAAAGTCAAACCGGGACCGCCATCAGCAAATTTCCATGTCAGCAGGAAACGGTCACAAGGAATTGCTTGCAGCATCTGAAAAAATTTTAAAGAAGGAAATGGCTGCTGTGGGGCCCGCTGTTGGGCGTTCTGTTACTCCTGTTATCGAAAAGGCAGTTGCAACAGCTATCACAGAGGCTTTCCAGAGAGGTGTAGGTGACAAGGCTGTAAATCAGTTAGAAAAAACAGTTAGTTCTAAGCTTGAAGCAACTGTTTCTAGGCAAATTCAAGTTCAATTCCAAACTTCTGGGAAACAAGCTTTACAGGAAGCACTCAAGTCCAGTATGGAAGCTTCCGTTCTTCCTGCCTTCGAGATGTCCTGCAAAACCATGTTTGACCAAATTGACTCCACATTTCAAAAAGGAATGGTTGACCATACAACTGCAGCTCACCAGCAAATTGAATCCATACATTCGCCTTTAGCATTTGCTTTGAGGGATACCATAAATTCAGCATCATCGATGACTCAAACATTGAGCAGTGAGCTGACTGATGGTCAAAGGAAGTTGGTAGCTCTTGCAGGGTCGAAATCGGTAATTCCTTTAATAGGCCAAATCAGCAACGGGCCCACAGGCGGTTTCCATGAGAAGATCGAAACACCAGTGGATCCAACAAAAGAGCTATCAAGATTAGTATACGAGCACAAATACGAGGAGGCTTTTACTTCCGCCCTTCAAAGAAGTGATGTTAGAATTGTTTCCTGGTTATGCTCACAGGTGGATTTACAGGGGATATTAACGAGCAATTCTCTACCTCTGAGCCAAGGGGTATTACTGTCATTACTGCAGCAGTTGGCATGTGATATTGGGAACGATACATCGAGGAAACTTGGATGGATGATGGATGTGGTGGTGGCGATCAAACCAACGGATGGGATCATTGCGATGCATGTGAGGCCGATATTTGAACAAGTGTATTCGATACTCAACCATCAAGTCAGCATTCCCACCACTTCGGTTGCTGAGCTGTCGAGCATACGCGTTGTCATGAGACTTGTCAACTCGACGCTTCGGAGCTTGTAA 3756 44.38 MASPGNQNQQPGGGPFDVQRLFNPSSSPPPITTTLQNPNHPYPPPSTAASYPPPTVTGGPYSYLPPQTNPLFHHQFHIPPPPFHPQQQPDNHLPSNLQHQRSLPYPTSPLQPPSPNNTNPNHGARLMALLSAPPPSIPDIPSQSSIPLPNPMLPSSTGPSRMPSSKLPKGRHLVGDRVVYDIDVRLPGEIQPQLEVTPITKYGSDPCLVVGRQIAVNKTYICYGLKPGTIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHVLASASMDGRVYVWKITEDPDEDDKPQITGKTVTAVQILGEAEPVRPRVCWHCHKQEVLVVGIGNRILRFDTTKIGRGESYSADEPLKCHVDKLIDGIQFVGKHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKSSPIAILRPHDGLPVNSVTFLTAPHRPDHIILITGGPLNREMKIWVSESEEGWLLPSDADSWHCTQALELKSSETRSEDSFFNQVVALSNSGLLLLANAKKNAIYAVHLDYGPNPETTRMDYIAEFTVTMPILSFTGTSDILSHGDHIVQVYCVQTQAIQQYALDLSQCLPPPLGAEVFTVPEPSGSKSDDMPLTEASINETDISCIVSPTVPPSPKFARDVSDMRSPSGGFEPRQQVNGYGDQKILETSNSNLSNVTSLDDDVRADESKVVKDDRTVKFMRPTHLVTPSELMATLSTEVNNITENTHDVAVNPDTQNAEVEVKVVGEMGMSQNAEVANEKSKLFSSQASGLGIEMARESYESKQLDDITDQTLDAQDDVQDMEIETSVPVGPTSKSKKKKGKNAQTAGPSVLKSTDSSDEIGVGLSMSILSQIQSMQETIAQILTSQKEIQKQIPVVVAGPVTKEGKRIEAGIVKTMEKIHKANSDAYVARCQEEFAKQEKSNRDRHQQISMSAGNGHKELLAASEKILKKEMAAVGPAVGRSVTPVIEKAVATAITEAFQRGVGDKAVNQLEKTVSSKLEATVSRQIQVQFQTSGKQALQEALKSSMEASVLPAFEMSCKTMFDQIDSTFQKGMVDHTTAAHQQIESIHSPLAFALRDTINSASSMTQTLSSELTDGQRKLVALAGSKSVIPLIGQISNGPTGGFHEKIETPVDPTKELSRLVYEHKYEEAFTSALQRSDVRIVSWLCSQVDLQGILTSNSLPLSQGVLLSLLQQLACDIGNDTSRKLGWMMDVVVAIKPTDGIIAMHVRPIFEQVYSILNHQVSIPTTSVAELSSIRVVMRLVNSTLRSL 1251
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03657 1251 Gene3D - 355 565 IPR015943 GO:0005515(InterPro)
Cien5g03657 1251 FunFam enhancer of mRNA-decapping protein 4 195 508 - -
Cien5g03657 1251 MobiDBLite consensus disorder prediction 1 33 - -
Cien5g03657 1251 MobiDBLite consensus disorder prediction 134 156 - -
Cien5g03657 1251 Gene3D - 213 354 IPR015943 GO:0005515(InterPro)
Cien5g03657 1251 SUPERFAMILY WD40 repeat-like 210 509 IPR036322 GO:0005515(InterPro)
Cien5g03657 1251 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 404 IPR001680 GO:0005515(InterPro)
Cien5g03657 1251 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 196 507 IPR032401 -
Cien5g03657 1251 MobiDBLite consensus disorder prediction 89 105 - -
Cien5g03657 1251 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 277 IPR001680 GO:0005515(InterPro)
Cien5g03657 1251 MobiDBLite consensus disorder prediction 1 170 - -
Cien5g03657 1251 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 23 1250 IPR045152 GO:0000932(PANTHER)|GO:0031087(PANTHER)|GO:0031087(InterPro)
Cien5g03657 1251 MobiDBLite consensus disorder prediction 34 51 - -
Cien5g03657 1251 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1121 1226 IPR049404 -
Cien5g03657 1251 SMART WD40-4 236 276 IPR001680 GO:0005515(InterPro)
Cien5g03657 1251 SMART WD40-4 356 395 IPR001680 GO:0005515(InterPro)
Cien5g03657 1251 SMART WD40-4 398 444 IPR001680 GO:0005515(InterPro)
Cien5g03657 1251 MobiDBLite consensus disorder prediction 773 817 - -
Cien5g03657 1251 Gene3D - 1164 1250 IPR044938 -
Cien5g03657 1251 FunFam Enhancer of mRNA-decapping protein 4 1164 1250 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03657 K12616 enhancer of mRNA-decapping protein 4
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Event-related genes

Select Gene_1 Gene_2 Event_name
66599 Cien5g03657 Cien9g01882
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr3:1977568 Cien5g03657 Cien-Chr5:83048202 dispersed
Cien Cien-Chr5:83048202 Cien9g01882 Cien-Chr9:37254682 wgd