AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03661 ATGAATGGAGGCAATGAAGTCAGTGAAGAGAAATGGGCGAAGCATTACTCGTCGAATCACCAGATACTGTTGGTTGGAGAAGGAGATTTTTCTTTTTCTCTGAGCCTGGCTATGTCTTTTGGCTCCGCTTCGAATATTGTCGCTTCTTCTCTCGATTCTTACGATGATGTTATCAGGAAATACAAGAGAGCCAAAAAAAACTTGCAAAAATTACGCGATTTTGGAGCTCAATTGTTACATGGAGTCGATACCATCAAAATGAAGCTCCACACAGATCTTACAATGCGAAAGTTTGACCGGATTGTATATAATTTCCCTCATGCTGGCTTTTTAGGGAAGGAAAGTGATGAGATCGTCATCATGTCGCACAAAAGTTTGGTTCGTGGTTTCTTCAGAAATGCATGTAGCTTGTTGCGTCCAAACGGTGAAGTTCATGTAACCCACAAGACCGAACACCTGTTCCACCATTGGAATATAGAAGAACTAGCAACCCAATGTTGTTTAACATTAGTTGAAAGTGTGGAGTTCAAGATTGAAGATTATCCTGGCTACTACAACAAAAGAGGAGATGGTAGGAAGTCCGACCTTCCTTTTCCTCTAGGAAAATGCACTACTTTCAAATTCATATTGTCTTCAAAAGCCATGAAATCAACCACCTCACACCGTAAAAGACCTCAACATAATGGACCAGGTTCATTGGCTCGATCCTTAACTCCTGCCATGTCTGCTTTGCTGGAAGCAAGTAGACAGGCTGCTGTGGAGGATCAGGCAAAAAAGCTGTTGGCCGAAGAGGAAAAAAAGTTATTGAAAGTTAATTCGGAGTTGGAGGGTGTTCGTGGGAAACTTGTTGATTCAGAGGCGAAAATAGTTGAGCTTGAACGAGACAAGTTTGATTTACAGAAGAAACTGGATAACACGTGTAGCCAGCTGGAAGAGGTCAATGCCCGATTGGAAGAGAAAGGGAAAGAGGATGCCTCTGACGTGGCAGACTTAGAGTGGCTACTCCAGATAGGAATTTCTTCTATTGTATGCCGGTTACTGAAATCTGCTGACTTTAGTTGGGAGAATGCTATGATTCAAGGTGCTTTTGTCGATTTAGGGTACCAGAAGGGTTGTCGGGAAATGAGGGACAAGGTGGCTCCGGACATGGTGGACACTGAATTACCAGGGTTTGACCTGGATATTGAAAAGAATCTGAAAGTTGCGCAGTACGCTCTTGCGGAGCCGAAATTGAGTGTTATGGATTATTTGACTGGAAATGGCGTTACGGTCGCCAAGTTGAAGAAATGGTGCGAGGAGGATTTGGAGTTATCATCATCAGGTTTGGGTACGAGTCAGCCTTCTCATAATTAG 1353 43.16 MNGGNEVSEEKWAKHYSSNHQILLVGEGDFSFSLSLAMSFGSASNIVASSLDSYDDVIRKYKRAKKNLQKLRDFGAQLLHGVDTIKMKLHTDLTMRKFDRIVYNFPHAGFLGKESDEIVIMSHKSLVRGFFRNACSLLRPNGEVHVTHKTEHLFHHWNIEELATQCCLTLVESVEFKIEDYPGYYNKRGDGRKSDLPFPLGKCTTFKFILSSKAMKSTTSHRKRPQHNGPGSLARSLTPAMSALLEASRQAAVEDQAKKLLAEEEKKLLKVNSELEGVRGKLVDSEAKIVELERDKFDLQKKLDNTCSQLEEVNARLEEKGKEDASDVADLEWLLQIGISSIVCRLLKSADFSWENAMIQGAFVDLGYQKGCREMRDKVAPDMVDTELPGFDLDIEKNLKVAQYALAEPKLSVMDYLTGNGVTVAKLKKWCEEDLELSSSGLGTSQPSHN 450
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03661 450 PANTHER PHENYLALANYL-TRNA SYNTHETASE 7 188 - GO:0005737(PANTHER)|GO:0070042(PANTHER)|GO:0070475(PANTHER)
Cien5g03661 450 FunFam Os09g0479300 protein 20 171 - -
Cien5g03661 450 Coils Coil 254 323 - -
Cien5g03661 450 Coils Coil 51 71 - -
Cien5g03661 450 Gene3D Vaccinia Virus protein VP39 14 178 IPR029063 -
Cien5g03661 450 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 61 176 IPR029063 -
Cien5g03661 450 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 23 188 IPR019446 GO:0070042(InterPro)|GO:0070475(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03661 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:83099846 Cien5g03663 Cien-Chr5:83108528 dispersed
Cien Cien-Chr5:83088921 Cien5g03661 Cien-Chr5:83099846 tandem
Cien Cien-Chr5:83099846 Cien5g03662 Cien-Chr5:83103114 tandem