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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien5g03699 ATGGCAATGTCGTCCTCTATGTTTTCTACACATGCCTTGTATGGCACCAAACTATCTCCTGAACAAAACAAGATCTTTGGTCACTCAAACAAGTCGGGTTTCTTCCATAAGCATCTGAATATCAAGAAAAACCAATCACACACTGAGAAATTGATGAGCTGGTGTAATAATGGAAGGATATCATCCAAGGATAGAATCCAATGTAAGGCATTACAACTCCAAACCAGCCCCACCTTCTTGAAAGGAGATAAATTTCAACTTCAAGATGTGATTGAAGCACAACAATTTGACAGAGATACCCTGGGTGCCATATTTGAAGTGGCACGTGAAATGGAAACAATTGAGAAGAAGTCACATGGAAGCCAGCTTTTGAATGGCTATCTAATGGCTACTCTTTTCTACGAGCCTTCAACCAGAACCAGGCTTTCATTTGAGTCAGCAATGAAGCGCTTAGGTGGCGAAGTTCTAACAACAGAAAATGCACGCGAGTTCTCTTCTGCTGCAAAGGGAGAAACACTTGAAGATTCTATTAGAACAGTGGAAGGGTATTCGGATATAATTGTAATGAGACATTTTGAAAGTGGTGCTGCCAGAAGAGCAGCCATGACAGCTAACATTCCCGTGATCAATGCTGGCGATGGTCCAGGTCAGCATCCTACTCAAGCTCTTCTTGATGTGTACACTATCGAAAGAGAGATAGGAAAGCTGGATGGAATTAAAGTTGGACTTGTTGGGGATCTTGCTAATGGGAGAACAGTTCGGTCTTTAGCATATCTTTTAGCCAAATATAATGATGTGAAAATCTACTTTGTTTCACCAGAAGTTGTAAAGATGAAGGAGGATATTAAGGAATACTTAACATTAAATGGAGTTGAATGGGAAGAAAGTAAGGATTTGAAGGAAGTTGCATCAAAATGTGATGTGGTGTACCAAACTCGCATACAGAAAGAACGTTTTGGAGAGAGAAGTGATATTTATGAAGAAGCCCGTGGGAAATATATTATTGATAGAGATGTATTGGGTGTCATGCAGAAACATGCCATTGTCATGCATCCTCTCCCAAGGCTTGATGAGATAACAGTGGATGTAGATGGGGATCCAAGGGCTGCTTATTTTAGACAAGCAAAAAACGGACTCTACATTAGGATGGCTTTGCTGAAGCTTTTACTTGTTGGTTGGTGA 1182 40.61 MAMSSSMFSTHALYGTKLSPEQNKIFGHSNKSGFFHKHLNIKKNQSHTEKLMSWCNNGRISSKDRIQCKALQLQTSPTFLKGDKFQLQDVIEAQQFDRDTLGAIFEVAREMETIEKKSHGSQLLNGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDSIRTVEGYSDIIVMRHFESGAARRAAMTANIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYNDVKIYFVSPEVVKMKEDIKEYLTLNGVEWEESKDLKEVASKCDVVYQTRIQKERFGERSDIYEEARGKYIIDRDVLGVMQKHAIVMHPLPRLDEITVDVDGDPRAAYFRQAKNGLYIRMALLKLLLVGW 393
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien5g03699 393 Gene3D Aspartate-ornithine carbamoyltransferase 90 386 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cien5g03699 393 Pfam Aspartate-ornithine carbamoyltransferase, carbamoyl-P binding domain 89 230 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Cien5g03699 393 Pfam Aspartate-ornithine carbamoyltransferase, Asp-Orn binding domain 237 388 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cien5g03699 393 PRINTS Aspartate carbamoyltransferase signature 163 172 - -
Cien5g03699 393 PRINTS Aspartate carbamoyltransferase signature 217 234 - -
Cien5g03699 393 PRINTS Aspartate carbamoyltransferase signature 349 354 - -
Cien5g03699 393 PRINTS Aspartate carbamoyltransferase signature 371 385 - -
Cien5g03699 393 PRINTS Aspartate carbamoyltransferase signature 309 318 - -
Cien5g03699 393 PRINTS Aspartate carbamoyltransferase signature 123 145 - -
Cien5g03699 393 NCBIfam aspartate carbamoyltransferase 89 390 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Cien5g03699 393 Gene3D Aspartate-ornithine carbamoyltransferase 218 377 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cien5g03699 393 FunFam Aspartate carbamoyltransferase 89 221 - -
Cien5g03699 393 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 83 390 - -
Cien5g03699 393 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 133 152 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cien5g03699 393 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 218 229 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cien5g03699 393 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 355 378 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cien5g03699 393 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 345 354 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cien5g03699 393 Hamap Aspartate carbamoyltransferase [pyrB]. 87 392 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Cien5g03699 393 SUPERFAMILY Aspartate-ornithine carbamoyltransferase 85 390 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cien5g03699 393 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 133 140 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cien5g03699 393 FunFam Aspartate carbamoyltransferase 2 222 377 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien5g03699 K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
66610 Cien5g03699 Cien6g00034
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:66003105 Cien5g03699 Cien-Chr5:83388503 dispersed
Cien Cien-Chr5:83388503 Cien6g00034 Cien-Chr6:413532 wgd