AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien7g02564 ATGGGAACGGAGAACCCGAGATCGTCCGTTGAAATTACGGAACCCTTGCTGCACGAATCAAATCAGGAGAAACCGATCGAATTGGATCCAGAAACGATTCCGGAATGGAAAGATCAGATCACGTTAAGGGGGTTAGTAGTCAGTGCTCTACTCGGAACGCTGTTTTGTATCATCACTCACAAGCTCAATCTCACCGTCGGGATCATCCCTTCCTTGAACGTCGCAGCTGGTTTGTTGGGGTTTTTCTTCGTTAAATCATGGACGACTTTCCTCGGTAAGTTTGGGTTTTCTGTTAAGCCGTTCACTAGACAGGAGAACACCGTTATTCAGACCTGCGTCGTTGCTTGCTATGGCCTTGCGTTCAGCGGTGGATTTGGGTCATATCTGCTTTCAATGGATGAAAGAACATACAATTTGATTGGTGCTGATTACCCTGGTAATCGAGCTGAAGACGTTAAGAACCCAGGATTACTATGGATGATGGGTTTCATTTTTGTCGTCAGTTTTCTTGGTCTTTTCAGTCTTGTACCTCTTCGCAAGGTTATGGTTATGGATTATAAGCTTACATATCCTAGTGGAACAGCAACAGCAATGTTGATAAATAGTTTTCACACTACTACTGGTGCTGAGCTGGCAAGGAAACAAGTGAGCTCACTTGGCAAGTATTTGAGCATAAGTTTTGTGTGGAGTTGCTTTAAGTGGTTCTTTAGTGGTGTTGGTGATGCTTGTGGTTTTGATAATTTTCCAAGTTTTGGGTTGATGTTATACAAGAACACATTTTACTTTGACTTTAGTCCAACTTATGTTGGATGTGGTCTTATTTGCCCGCATATAGTCAACTGTTCGGTTCTTTTCGGAGCAATTGTGTCGTGGGGATTTCTTTGGCCGTATATTACTACACGCGCGGGTGATTGGTATCCAGCTGATCTTGGAAGCAATGACTTCAAAGGTCTTTACGGTTACAAGGTATTTATAGCCATTTCCCTTATTCTTGGAGATGGTCTTTACAATCTAGTAAAGATTATCGCCATTTCCATTAAAGCAATATGGAACAATTCCACCAAACCACAAGACCTCCCTACAACAAAAGAGATTCTAGATTCAGAAACAACAAAATCGCAAATGGAGGAAAAGAAAAGAGACGCCGTATTCCTAAAAGACAGTATCCCGACATGGTTTGCAGCATCGGGATACGTAGCCCTAGTCGGAATATCCATGGCGACAATGCCTCTAATTTTTCCGCCATTAAAATGGTACCTGGTTCTATGCTCGTACATCATCGCTCCCGCTCTAGCTTTCTGCAACTCATACGGCACCGGTCTCACAGACTGGAGTCTCGCTTCAACGTACGGCAAAATCGGACTGTTCATCATCGCGTCAATAGTCGGAAGCGACGGCGGCGTCATCGCCGGATTAGCAGCATGCGGCGTCATGATGTCGATTGTGGCCACAGCCGCGGATCTGATGCAGGATTTCAAAACCGGTTACCTTACTTTATCATCGGCGAAATCAATGTTCGTGAGTCAATTAGTCGGAACCGCCATGGGATGTATCATCGCGCCGCTCACTTTTTGGATGTTTTGGTGCGCGTTTGAAATTGGAACCCCCGATAGTCCGTATAAGGCGCCGTACGCCGTTATCTACAGGGAAATGGCGATTCTCGGAGTTGAAGGGTTTTCTGAACTTCCGAAACATTGTTTAGCGTTGTGTTGTGGGTTTTTTGTGGCGGCGTTGGTTTTGAATCTGATTAGGGATTGGAGTCCGGCGAAGGTGTCTCAGTTTGTTCCGATTCCGATGGCGATGGCGGTTCCGTTCTATATTGGCGCGTATTTTGCGATCGATATGTTTGTTGGGACGGTGATATTGTTTGTGTGGGAAAGAGTGAATAAGAAGGATGCGGAGGATTACGCCGGTGCGGTGGCTTCCGGTTTGATTTGTGGGGACGGGATATGGACGATTCCGTCGGCGATTCTCTCGATTTTGAGAGTTGATCCTCCGATCTGCATGTACTTTGGGCCTTCGATTAGCTCTTGA 2034 45.58 MGTENPRSSVEITEPLLHESNQEKPIELDPETIPEWKDQITLRGLVVSALLGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFFVKSWTTFLGKFGFSVKPFTRQENTVIQTCVVACYGLAFSGGFGSYLLSMDERTYNLIGADYPGNRAEDVKNPGLLWMMGFIFVVSFLGLFSLVPLRKVMVMDYKLTYPSGTATAMLINSFHTTTGAELARKQVSSLGKYLSISFVWSCFKWFFSGVGDACGFDNFPSFGLMLYKNTFYFDFSPTYVGCGLICPHIVNCSVLFGAIVSWGFLWPYITTRAGDWYPADLGSNDFKGLYGYKVFIAISLILGDGLYNLVKIIAISIKAIWNNSTKPQDLPTTKEILDSETTKSQMEEKKRDAVFLKDSIPTWFAASGYVALVGISMATMPLIFPPLKWYLVLCSYIIAPALAFCNSYGTGLTDWSLASTYGKIGLFIIASIVGSDGGVIAGLAACGVMMSIVATAADLMQDFKTGYLTLSSAKSMFVSQLVGTAMGCIIAPLTFWMFWCAFEIGTPDSPYKAPYAVIYREMAILGVEGFSELPKHCLALCCGFFVAALVLNLIRDWSPAKVSQFVPIPMAMAVPFYIGAYFAIDMFVGTVILFVWERVNKKDAEDYAGAVASGLICGDGIWTIPSAILSILRVDPPICMYFGPSISS 677
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien7g02564 677 Pfam OPT oligopeptide transporter protein 39 658 IPR004813 GO:0035673(InterPro)
Cien7g02564 677 NCBIfam OPT family oligopeptide transporter 32 655 IPR004813 GO:0035673(InterPro)
Cien7g02564 677 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 19 672 IPR045035 GO:0016020(PANTHER)|GO:0035673(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien7g02564 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
66936 Cien7g02564 Cien8g03376
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr5:25672489 Cien7g02564 Cien-Chr7:39436672 dispersed
Cien Cien-Chr7:11917716 Cien7g02564 Cien-Chr7:39436672 dispersed
Cien Cien-Chr7:39436672 Cien8g03376 Cien-Chr8:63055621 wgd