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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien7g02609 ATGGAGAGAAACGAGGCGTGTGGTTTGAGGGCATTTGGTGGTTTCGAAATCGGACTTGGAATGGGAGTCGGAATCAATTTTACCAATAAACCCACATCTGCTACTACTGCTACTTCTGCGGCTGTCGTCGACAGGGATCTGGTGGCTGCCGCTCGTTTTGATTTCCTTAAGAAGAAACGGATGCCCAGGTTCCGCCGTGGTGCCTCCGCCGCCGTCCGCTCCTTCCGCCCCTTCACCTCCTTCGCCAGTCGTCTTCCTGCAAGTATTGTCGATCAAGAAAGGCTAACGTTTCTCTTCAGCAAGAAGCTGCAAAAAAGTGACGTAGGTGTGCTTAAAAGAATTGTGCTTCCAAAGAAACCAGCCGAGACACACCTACCAGCTCTAATCGCGAAGGAAGGTATCATTTTGGAGATGGATGACATGGATGGCATGCATGTATGGTGTTTCAAATTTAGGTTCTGGCCAAATAACAACAGCCGTATGTATGTCCTCGAAGGCACTGGGGAATTTGCCGAGGAGCATGAACTACAATTGGGCGACTATATCATGTTGTATCGGGATTCAATCAACCTGAACTATGTGATACAGGCGGTAAAAGCTTACGAAGTGGAGGAATACACGAAGAAAGAGATGCAAACAAGCCACGCTACTCAGGGGAAATCCGGCAAAGCGCCGCCACCAAACGGTGGTTTGATGAACCAAAACTGGCCATGGGGTGGCGGTCTTGAGGTGGAGGTTCTTAACCCCACAAATTACCCGATGAACATATCGACCGTTGAAGAACAAATGGGGATGACTTTCGTATATGATACAAGCTATTCGAATGACACAATGACTCCACTTGATTTCTTGGGTGGGTTCATGACAAGCTACCCGCCAGCTCAGCCGAACTTTGCGATCGAGAATTTGTCTATTGATGATCTTTATAAGATCTAG 936 47.97 MERNEACGLRAFGGFEIGLGMGVGINFTNKPTSATTATSAAVVDRDLVAAARFDFLKKKRMPRFRRGASAAVRSFRPFTSFASRLPASIVDQERLTFLFSKKLQKSDVGVLKRIVLPKKPAETHLPALIAKEGIILEMDDMDGMHVWCFKFRFWPNNNSRMYVLEGTGEFAEEHELQLGDYIMLYRDSINLNYVIQAVKAYEVEEYTKKEMQTSHATQGKSGKAPPPNGGLMNQNWPWGGGLEVEVLNPTNYPMNISTVEEQMGMTFVYDTSYSNDTMTPLDFLGGFMTSYPPAQPNFAIENLSIDDLYKI 311
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien7g02609 311 CDD B3-DNA 97 196 IPR003340 GO:0003677(InterPro)
Cien7g02609 311 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 86 208 IPR044800 GO:0003700(InterPro)
Cien7g02609 311 SUPERFAMILY DNA-binding pseudobarrel domain 97 196 IPR015300 -
Cien7g02609 311 SMART B3-2 99 201 IPR003340 GO:0003677(InterPro)
Cien7g02609 311 Gene3D - 87 211 IPR015300 -
Cien7g02609 311 ProSiteProfiles B3 DNA-binding domain profile. 99 201 IPR003340 GO:0003677(InterPro)
Cien7g02609 311 Pfam B3 DNA binding domain 99 192 IPR003340 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien7g02609 K09287 RAV-like factor
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Event-related genes

Select Gene_1 Gene_2 Event_name
65274 Cien2g02727 Cien7g02609
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr3:2998316 Cien7g02609 Cien-Chr7:40358746 transposed
Cien Cien-Chr5:6553761 Cien7g02609 Cien-Chr7:40358746 transposed
Cien Cien-Chr2:73306804 Cien7g02609 Cien-Chr7:40358746 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cien9g00563 . 1 464 B3 DNA Binding Superfamily AT1G30330 86.709 0.0 835.0
Cien9g00748 . 205 296 B3 DNA Binding Superfamily AT5G18000 32.653 8.14e-06 43.5
Cien9g00828 ACH 1 463 B3 DNA Binding Superfamily AT1G19220 77.849 0.0 723.0
Cien9g01363 . 207 234 B3 DNA Binding Superfamily AT5G60450 89.286 1.96e-10 60.8
Cien9g01448 ACH 1 463 B3 DNA Binding Superfamily AT1G19220 71.097 0.0 657.0
Cien9g02201 ACH 22 81 B3 DNA Binding Superfamily AT4G21550 45.0 2.43e-14 64.7
Cien8g00361 . 167 289 B3 DNA Binding Superfamily AT1G05930 25.581 9.87e-07 46.2
Cien8g00366 . 167 289 B3 DNA Binding Superfamily AT1G05930 32.558 6.67e-13 63.9
Cien8g00367 . 167 289 B3 DNA Binding Superfamily AT1G05930 31.008 5.59e-09 52.8
Cien8g00368 . 167 289 B3 DNA Binding Superfamily AT1G05930 31.298 3.19e-09 54.3
Cien8g01154 . 1 594 B3 DNA Binding Superfamily AT2G33860 47.428 1.40e-167 489.0
Cien8g01939 . 16 124 B3 DNA Binding Superfamily AT3G18960 32.11 3.09e-11 61.2
Cien8g02883 . 112 222 B3 DNA Binding Superfamily AT3G19184 49.55 5.19e-37 134.0
Cien8g02884 . 95 205 B3 DNA Binding Superfamily AT5G42700 48.649 4.76e-34 126.0
Cien8g02949 . 8 102 B3 DNA Binding Superfamily AT1G16640 41.053 1.97e-15 69.3
Cien7g00408 . 1 614 B3 DNA Binding Superfamily AT4G23980 60.856 0.0 699.0
Cien7g01754 . 149 349 B3 DNA Binding Superfamily AT1G19850 69.951 6.48e-84 285.0
Cien7g02069 . 112 222 B3 DNA Binding Superfamily AT3G19184 41.441 7.57e-24 99.0
Cien7g02070 . 112 261 B3 DNA Binding Superfamily AT3G19184 40.667 6.68e-33 124.0
Cien7g02125 . 4 107 B3 DNA Binding Superfamily AT5G66980 41.905 6.07e-21 86.7
Cien7g02609 ACH 45 313 B3 DNA Binding Superfamily AT3G26790 41.758 7.64e-59 189.0
Cien6g00093 ACH 264 398 B3 DNA Binding Superfamily AT2G30470 49.265 4.17e-37 137.0
Cien6g01240 . 100 151 B3 DNA Binding Superfamily AT1G59750 51.923 1.31e-11 59.7
Cien5g00172 . 53 393 B3 DNA Binding Superfamily AT5G62000 45.821 8.12e-82 270.0
Cien5g00380 . 12 719 B3 DNA Binding Superfamily AT3G24650 41.911 1.47e-141 431.0
Cien5g01451 ACH 8 714 B3 DNA Binding Superfamily AT4G32010 47.143 0.0 649.0
Cien5g01474 . 4 223 B3 DNA Binding Superfamily AT5G58280 50.877 5.26e-69 216.0
Cien5g01971 . 82 136 B3 DNA Binding Superfamily AT1G19850 69.091 6.80e-18 82.4
Cien5g02163 ACH 337 545 B3 DNA Binding Superfamily AT2G28350 43.182 1.01e-35 130.0
Cien4g01473 . 103 216 B3 DNA Binding Superfamily AT2G33860 62.069 2.60e-41 144.0
Cien4g02500 . 1 813 B3 DNA Binding Superfamily AT5G62000 57.439 0.0 858.0
Cien4g02848 . 1 221 B3 DNA Binding Superfamily AT3G19184 55.702 2.27e-71 218.0
Cien4g03409 . 171 216 B3 DNA Binding Superfamily AT1G19850 45.652 4.92e-09 48.9
Cien3g01315 . 340 374 B3 DNA Binding Superfamily AT1G19850 62.857 1.70e-08 48.1
Cien3g03503 ACH 1 662 B3 DNA Binding Superfamily AT4G30080 56.012 0.0 672.0
Cien2g02575 . 62 772 B3 DNA Binding Superfamily AT5G60450 54.752 0.0 751.0
Cien2g02608 . 2 693 B3 DNA Binding Superfamily AT2G28350 56.056 0.0 712.0
Cien2g02727 ACH 114 198 B3 DNA Binding Superfamily AT3G26790 49.412 3.79e-20 84.0
Cien2g03786 . 164 289 B3 DNA Binding Superfamily AT1G05930 32.331 2.11e-09 54.7
Cien1g00655 . 12 662 B3 DNA Binding Superfamily AT4G30080 55.178 0.0 665.0
Cien1g00656 . 131 229 B3 DNA Binding Superfamily AT1G19850 47.0 1.85e-21 85.5
Cien1g02525 ACH 1 478 B3 DNA Binding Superfamily AT1G19220 79.707 0.0 783.0
Cien1g03089 . 1 227 B3 DNA Binding Superfamily AT3G19184 58.696 6.06e-84 249.0
Cien1g04048 ACH 8 769 B3 DNA Binding Superfamily AT2G30470 45.522 0.0 622.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cien B3 2.6e-12 CL0405 TF B3