AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien7g02618 ATGGCGACACCTACATACCTATGTGGAGCTAAGACCCCGTACTATTTCTCCAAAAGTGCTTCGTACGCCCGATCCTCGTGCTATCAGCACCAGAAACACCTCAAATTTGCTTCATCCGTTGCTTCATTTGGTGGAGCGTGTAGAGCGTTTCAGGTTTCATCTCCAGAAAAGGGAAGAGGTCTGAGGATTGTTTGCAATGTACAAAAAGTAGACGTTCTCACTAGAAGTGAACCCGAAAGCAAAACTTCAGAAGGATTAAGCAAACAGTTATCATGTGTGATGAAGTTTGGTGGTTCATCTGTGGCTTCAGCAGAAAGAATGAAAGAAGTAGCCGACCTCATCCTCAGCTTCCCTGAAGAAAGCCCTGTGATTGTCCTTTCCGCCATGGGCAAGACCACCAACAAGCTTATAGCGGCTGGAGAGAAGGCTGCAAGCTGTGTTTCCATTGTATCTGAAATTGAGGAATTGACCTTCGTGAAAGAACTCCATTACAGGACAGTGGAAGAGCTTGGATTAGAAAAAACACTCGTTTCAGACCACCTAGAAAAACTAGAGCGACTTCTGAATGGAATTTCTGTACTTAAAGAGTTCACACCACGTGCAAGAGACTACTTAGTCTCATTTGGAGAATGCATGTCCACAAGAATATTTTCTGCATACTTGAATAAAATCGGTGTCAAATCTCGCCAATATGATGCATTTGAAATCGGTTTCATAACAACAGACGATTTCACAAATGCGGATATTTTAGAAGCAACTTATCCAGCTGTCGCCAAGACATTAAACGGTGATTGGATTAAAGATCCTGCAATCCCTATTGTCACTGGCTTCCTTGGAAAGGGTTGGAGAACTTGTGCTGTGACCACATTGGGTAGAGGTGGTAGTGATTTGACAGCCACAACAATTGGTAAAGCACTTGGTTTACGAGAAATTCAGGTATGGAAGGATGTTGATGGTGTTTTGACATGTGACCCTAATATATATTCGGGTGCTGAACCTGTTCCATATTTGACTTTCGATGAAGCCGCTGAACTTGCATATTTTGGTGCCCAGGTCCTACATCCACAATCAATGAGGCCTGCAAGAGAGGGTGATATACCAGTTAGGGTTAAAAATTCTTACAACCCTAATGCCCCTGGTACCTTAATTACTAAATCAAGAGATATGAGTAAGGCCGTACTTACTAGCATTGTTTTGAAACGTAATGTTACAATGTTGGACATTGTTAGCACTCGTATGCTTGGTCAATTTGGATTCCTTGCTAAGGTGTTTTCAATTTTTGAGGATTTGGGAATATCAGTGGATGTGGTGGCCACAAGTGAAGTCAGCATTTCATTAACATTAGATCCTTCAAAGCTTTGGAGTAGGGAGTTGATTCAACAGGCAAGCGAACTTGATCATGTTGTGGAAGAACTCGAAAAAATTGCGAAAGTAAATCTCCTTCAACACAGATCAATTATTTCACTCATTGGGAACGTTCAAAGATCCTCACTTGTATTAGAAAAGGCGTTTCGTGTTCTTCGTATGAACGGAGTGAATGTTCAAATGATATCGCAAGGAGCATCGAAGGTGAATATATCGTTGATTGTAAACGATAGTGAAGCCGAAAGATGTGTGAGAGCTTTGCATTCGGCTTTCTTTGAGAGTGACATGTCCGACATCGATTCATAA 1671 41.83 MATPTYLCGAKTPYYFSKSASYARSSCYQHQKHLKFASSVASFGGACRAFQVSSPEKGRGLRIVCNVQKVDVLTRSEPESKTSEGLSKQLSCVMKFGGSSVASAERMKEVADLILSFPEESPVIVLSAMGKTTNKLIAAGEKAASCVSIVSEIEELTFVKELHYRTVEELGLEKTLVSDHLEKLERLLNGISVLKEFTPRARDYLVSFGECMSTRIFSAYLNKIGVKSRQYDAFEIGFITTDDFTNADILEATYPAVAKTLNGDWIKDPAIPIVTGFLGKGWRTCAVTTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIYSGAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITKSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASELDHVVEELEKIAKVNLLQHRSIISLIGNVQRSSLVLEKAFRVLRMNGVNVQMISQGASKVNISLIVNDSEAERCVRALHSAFFESDMSDIDS 556
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien7g02618 556 CDD AAK-AK-LysC-like 92 384 IPR041746 -
Cien7g02618 556 FunFam Aspartokinase 404 477 - -
Cien7g02618 556 NCBIfam aspartate kinase 93 548 IPR001341 GO:0004072(InterPro)|GO:0008652(InterPro)
Cien7g02618 556 FunFam Aspartokinase 1 478 547 - -
Cien7g02618 556 Gene3D - 395 547 - -
Cien7g02618 556 Gene3D - 404 481 - -
Cien7g02618 556 SUPERFAMILY ACT-like 392 492 IPR045865 -
Cien7g02618 556 ProSiteProfiles ACT domain profile. 408 488 IPR002912 -
Cien7g02618 556 FunFam Aspartokinase 196 383 - -
Cien7g02618 556 ProSitePatterns Aspartokinase signature. 93 101 IPR018042 GO:0004072(InterPro)|GO:0008652(InterPro)
Cien7g02618 556 SUPERFAMILY Carbamate kinase-like 93 386 IPR036393 -
Cien7g02618 556 Gene3D - 93 383 IPR036393 -
Cien7g02618 556 Pfam ACT domain 487 546 IPR054352 -
Cien7g02618 556 SUPERFAMILY ACT-like 475 550 IPR045865 -
Cien7g02618 556 Coils Coil 455 475 - -
Cien7g02618 556 Gene3D Aspartokinase, catalytic domain 130 225 IPR042199 -
Cien7g02618 556 FunFam Aspartokinase 130 225 - -
Cien7g02618 556 Pfam Amino acid kinase family 92 372 IPR001048 -
Cien7g02618 556 PANTHER ASPARTATE KINASE 89 548 - GO:0004072(PANTHER)|GO:0005829(PANTHER)|GO:0009089(PANTHER)|GO:0009090(PANTHER)|GO:0009570(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien7g02618 K00928 aspartate kinase [EC:2.7.2.4]
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Event-related genes

Select Gene_1 Gene_2 Event_name
65272 Cien2g02720 Cien7g02618
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr2:90751874 Cien7g02618 Cien-Chr7:40697180 transposed
Cien Cien-Chr2:73269042 Cien7g02618 Cien-Chr7:40697180 wgd