AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cien7g02624 ATGCTGAGAGCCGGAAGCAGGAGGCTAGCTTCTCTCACATCTCCATGGAGGCACCAAACCTCCGCCTCCGCCTCAATCATCTCGAAAAACACTCAGATCGATGACGCCGCTGACGATCTTCGATCGACTCACGCCTCATCCCCCTTCAACCATCCATTTCGTCCGTTCTCCAGAGGATTTGCTTCAAACATAACCCCAAAATTCGAGGACACAATCCCACCAACAATAGCCGCAATCACAAACCCAACATCCAAAATCATCTACGATGAACACAACCACGAGCGCTATCCACCTGGCGACCCAAGCAAACGCGCATTCGCGTATTTCGTCTTGACAGGTGGCCGATTCGTGTACGCGTCCCTCCTCCGTCTCCTCGTCCTCAAATTCATCCTCAGCATGTCCGCGAGTAAAGACGTTCTCGCCCTCGCCTCTTTAGAAGTCGACCTCTCCAGCATCGAACCGGGGTCCACCGTGACCGTCAAGTGGCGTGGAAAGCCCGTGTTTATCAGAAGGCGAACAGAGGACGATGTCAAGCTGGCGAATAGCGTTGACGTGGCGTCTCTGCGGGACCCACAGGAAGATTCGGTTAGGGTTAAGGATCCCGAGTGGCTTATTGTGGTCGGTGTGTGTACGCATTTGGGGTGTATTCCGTTACCGAACGCAGGTGATTTTGGCGGGTGGTTTTGCCCGTGTCATGGATCGCATTATGATATTTCCGGAAGGATCCGGAAGGGGCCGGCTCCGTATAACTTGGAGGTGCCGACTTATAGTTTCTTGGAGGACAACAAGTTGCTTATTGGGTGA 804 53.36 MLRAGSRRLASLTSPWRHQTSASASIISKNTQIDDAADDLRSTHASSPFNHPFRPFSRGFASNITPKFEDTIPPTIAAITNPTSKIIYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLLRLLVLKFILSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDVKLANSVDVASLRDPQEDSVRVKDPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEDNKLLIG 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cien7g02624 267 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 196 265 IPR017941 GO:0051537(InterPro)
Cien7g02624 267 Pfam Rieske [2Fe-2S] domain 196 252 IPR017941 GO:0051537(InterPro)
Cien7g02624 267 Gene3D - 136 267 IPR036922 GO:0051537(InterPro)
Cien7g02624 267 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 73 267 IPR014349 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Cien7g02624 267 CDD Rieske-cytochrome-bc1 144 267 - -
Cien7g02624 267 PRINTS Rieske 2Fe-2S subunit signature 205 216 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cien7g02624 267 PRINTS Rieske 2Fe-2S subunit signature 227 239 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cien7g02624 267 PRINTS Rieske 2Fe-2S subunit signature 239 251 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cien7g02624 267 SUPERFAMILY ISP domain 141 264 IPR036922 GO:0051537(InterPro)
Cien7g02624 267 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 137 267 - -
Cien7g02624 267 Pfam Ubiquinol cytochrome reductase transmembrane region 100 138 IPR004192 GO:0008121(InterPro)
Cien7g02624 267 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 124 267 IPR006317 GO:0008121(InterPro)
Cien7g02624 267 SUPERFAMILY ISP transmembrane anchor 84 140 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cien7g02624 K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cien Cien-Chr7:11096488 Cien7g02624 Cien-Chr7:40757356 wgd