AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind2g04240 ATGGCATCAATGGCGATCATATCTCGCAAACTAAAACTAAACCCATTTCACCTAACCCCTAAATTCATCACCACCTTTTCATTCCGATCACAAGAAGCTCAGTTAGCCACCGAACAACCACCGTCAGCTCCGTCGCCGCTCCCACCAAACCCCGCCACCGGCAGCCCACTCTACAGCCAAAACTGGCGCAACCCCACTTCACTTTCCACGTCAGCATCACTAATCCCATCTGGGTTTGCAAATTCATCTTCAAAGATTGAAGCTTTAGCTCAGACTTTGGACAATGACGCAATCATAAACGTTTTTGCTGACTGGATGACGTCACAGAGATGGTTAGATGTTAAGCATTTGTTTGAGTATTGGATTAGGAGTTTGGATAGTAATGGGAAGCCCAATAAACCTGATGTTAATTTGTATAATCATTATTTGCGCGCCAATTTGATGGTTGGTGTTTCCGCTGGTGAGTTGTTGGATTTGGTTGCGAAGATGGAGGATTATCTTGTGGTGCCCAATACCGCCAGCTTTAATTTGGTCTTGAAAGCTATGTTTCAGGCTAGAGAGTCTGAAGCTGCGGTTAAGCTGATTGATAGGATGATCCAGACTGGAAAGGATCCAAAAGGTGCTTTACCTGATGACGAGTCTTATCACCTGGTTGTGCGGTTGCTGCTATCCCAAAATCAGATTGATGCTGCTTTGAAGTACATTGATTTAGCCTTAACATCAGGCTACCTGTTATCAGTTGAAGTTTTCACAGACTGTGTGCGGAGCTGTGTTAATACAGGAAGGCTGGATACATTAGTATCGATAATAGAGAGATGTAAGAAAATGGATCAAAACAAAGCCTTATGTCCACCCTGGAACTTGTGCAATTACATCATAGACGTTGCAACACAATCAGATAATAGTGACTTAGCATTTTATGGTCTTGAGTTCATGGCAAGATGGATTGCTCGTGGAGAAATTGCAAGGCCACCTGTCTATTACCCATTGGAGAATTTAAGTCGTGCTGATCCTCCTTACAAGTCTGTTGCTGCACTAAACTGTGTTATTTTAGGCTGTGCAAATATATGGGATGTCGATCGAGCTTATCAAACTTTCAGTGCCATGGAGTCAAGTTTTGGATTGACTCCTGATATCCATTCATACAATGCTCTCTTGTGTGCATTTGGGAAGCTCCAAAAGGTGGTTGCTGGATTTGAACCAACAAAGGAGATTCTGAAAAAGGTTAGGAGGCGTTGTGTCCGAGAGATGGACTATGAAAGTAATGACAAAGTAGAGTCCTTTGCAAAAGATTTTAAAATCCGCATGGGTACAGAGAATCGCCGAGACATGTTATTCAACCTTCAATTTAGTACTGAGTACGCGTAA 1368 42.84 MASMAIISRKLKLNPFHLTPKFITTFSFRSQEAQLATEQPPSAPSPLPPNPATGSPLYSQNWRNPTSLSTSASLIPSGFANSSSKIEALAQTLDNDAIINVFADWMTSQRWLDVKHLFEYWIRSLDSNGKPNKPDVNLYNHYLRANLMVGVSAGELLDLVAKMEDYLVVPNTASFNLVLKAMFQARESEAAVKLIDRMIQTGKDPKGALPDDESYHLVVRLLLSQNQIDAALKYIDLALTSGYLLSVEVFTDCVRSCVNTGRLDTLVSIIERCKKMDQNKALCPPWNLCNYIIDVATQSDNSDLAFYGLEFMARWIARGEIARPPVYYPLENLSRADPPYKSVAALNCVILGCANIWDVDRAYQTFSAMESSFGLTPDIHSYNALLCAFGKLQKVVAGFEPTKEILKKVRRRCVREMDYESNDKVESFAKDFKIRMGTENRRDMLFNLQFSTEYA 455
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind2g04240 455 Gene3D Tetratricopeptide repeat domain 105 304 IPR011990 GO:0005515(InterPro)
Cind2g04240 455 Pfam Pentatricopeptide repeat domain 133 182 IPR002885 -
Cind2g04240 455 Gene3D Tetratricopeptide repeat domain 332 428 IPR011990 GO:0005515(InterPro)
Cind2g04240 455 MobiDBLite consensus disorder prediction 33 60 - -
Cind2g04240 455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Cind2g04240 455 PANTHER OS07G0599000 PROTEIN 395 455 IPR044605 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind2g04240 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr2:117386762 Cind9g00232 Cind-Chr9:184456917 dispersed