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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind2g04250 ATGACAACGAGTATTACTGTTGTTATAGGTACGACTTTGAACTACTTTTTAGATGACAAGATCAATAGAGCCGAGATACTTTTCCCCGGTGTCGCGTGTTTCTTGATTGCTGTCTGTCTTGGTTGTTGGGCATATCTGAATGACTGGGATGGTAGAGGCTGGGCACTTCTGGCTGGTTTTTTGTGTGGTTTTGGGAATGGTCTTCAGTTTATGGGAGGCCAAGCTGCTGGTTACGCAGCAGCAGATGCAGTTCAGGCACTTCCACTTGTGAGTACCTTTTGGGGTGTGATCTTTTTTGGTGAATACCGCAAATCGTCCAGGAGAACATATATACTCCTTGTAGGCATGCTATCCATGTTTATTGTGGCTGTTGCAGTTCTAATGGCGTCAGCTGGCCACAGAAAACATTAG 411 45.26 MTTSITVVIGTTLNYFLDDKINRAEILFPGVACFLIAVCLGCWAYLNDWDGRGWALLAGFLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGVIFFGEYRKSSRRTYILLVGMLSMFIVAVAVLMASAGHRKH 136
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind2g04250 136 Pfam Ureide permease 1 42 IPR009834 GO:0016020(InterPro)|GO:0071705(InterPro)
Cind2g04250 136 Pfam Ureide permease 44 130 IPR009834 GO:0016020(InterPro)|GO:0071705(InterPro)
Cind2g04250 136 SUPERFAMILY MFS general substrate transporter 4 129 IPR036259 -
Cind2g04250 136 PANTHER UREIDE PERMEASE 1-RELATED-RELATED 1 42 IPR030189 GO:0005274(PANTHER)|GO:0015505(PANTHER)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0071705(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind2g04250 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr2:118040085 Cind2g04254 Cind-Chr2:118187523 dispersed
Cind Cind-Chr2:117949838 Cind2g04250 Cind-Chr2:118040085 tandem
Cind Cind-Chr2:118040085 Cind2g04251 Cind-Chr2:118057938 tandem