AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind2g05006 ATGGAAGACCTAAAAGAACGTCTCCTCCCAACGAAAACATCATATGTCGTTATAAATCCTAGAGACGTTCAAAACCTTATAAAACGAGGCCAAGGTCTTAGATCATGGATACGTCTTGATGCTGCAACTGGTGACTCACAAGTTATTGAAGTTGACAAGTTCACTATGATGAGACGTTGTGATCTTCCTGCACGTGATCTTCGTCTACTTGATCCATTATTTGTCTACCCATCAACAATTCTCGGAAGAGAAAAGGCTATAGTTGTAAATTTGGAGCAGATCCGGTGTATTATAACATCTGACGAAGTCTTGCTTTTAAATTCACTAGATAGTTATGTGTTACAATATGTTGTGGAACTAAAGCGGCGGTTGAAAGGTGATGTTTGGCAGTCAGATAGTTCAAACTTTAACAGACGGAGAGGAGGTATGTTTGGGAACACGTCACCTGATTATTTGCCGTTTGAGTTCAAGGCTTTGGAAGTTGCTCTTGAGGCTGCTTGTACATTTTTGGACGCGCAGGCTGCGGAATTAGAAATTGAAGCTTACCCATTGTTAGATGAACTTACTTCGACAATCAGTACTTCAAACTTGGAACGTGTTCGGAGACTGAAAAGCAGACTGGTTGCATTGACACGAAGAGTTCAGAAGGTAAGAGACGAGATAGAGCAACTGATGGATGATGATGGAGATATGGCTGAGATGTATTTAACTGAAAAGAAGATACGAACAGAGTCATTATTCAATGGTGGTGATCAGTCTTTGGCAGGATGCAGATCACCGGATGGTATTCAATCCGTTTCTGCTCCAATATCTCCAGTTTGTTCACCTCCTTCTAATGGCCGAAGATTTAACAGAAATTTGAGCCTTGCAAGGAGTAGAATCGAGAGCACAAAGAGTTCAGAGAGCGGTACAGAAAATATCGATGAGCTGGAGATGCTGCTGGAGGCTTATTTTGTCGTCACTGATAGTACTCTAAATAAGCTTACATCGCTGAAGGAATATATTGATGACACCGAAGATTTCATCAATATTCAACTGGATACTGTTCGGAACCAGCTTATACAGTTTGAGTTGCTACTGACAACAGCAACATTTGTTGTTGCCATCTTCGGGGTCGTGGCAGGGATATTTGGAATGAATTTTGAGATATCGTTGTTTCAGAACCCATTGGCCTTCAAATGGGTACTGGTGCTTGCCGGGGTTTCTGGAGTCATTTTGTTCTGTACATTTTTGTGGTTTTTTAAGTACAGGAGACTTATGCAATTGTAG 1269 41.21 MEDLKERLLPTKTSYVVINPRDVQNLIKRGQGLRSWIRLDAATGDSQVIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITSDEVLLLNSLDSYVLQYVVELKRRLKGDVWQSDSSNFNRRRGGMFGNTSPDYLPFEFKALEVALEAACTFLDAQAAELEIEAYPLLDELTSTISTSNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKIRTESLFNGGDQSLAGCRSPDGIQSVSAPISPVCSPPSNGRRFNRNLSLARSRIESTKSSESGTENIDELEMLLEAYFVVTDSTLNKLTSLKEYIDDTEDFINIQLDTVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEISLFQNPLAFKWVLVLAGVSGVILFCTFLWFFKYRRLMQL 422
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind2g05006 422 Coils Coil 200 227 - -
Cind2g05006 422 FunFam Magnesium transporter MRS2-1 360 420 - -
Cind2g05006 422 FunFam Magnesium transporter MRS2-1 24 108 - -
Cind2g05006 422 CDD Mrs2-Mfm1p-like 36 419 IPR039204 -
Cind2g05006 422 Gene3D Magnesium transport protein CorA, transmembrane region 108 353 - -
Cind2g05006 422 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 20 419 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cind2g05006 422 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 359 412 IPR045863 -
Cind2g05006 422 Gene3D Magnesium transport protein CorA, transmembrane region 360 420 - -
Cind2g05006 422 Gene3D - 23 107 - -
Cind2g05006 422 Pfam Magnesium transporter MRS2-like 301 350 - -
Cind2g05006 422 Pfam Magnesium transporter MRS2-like 49 242 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind2g05006 K16075 magnesium transporter
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr2:340049430 Cind4g05260 Cind-Chr4:317184052 dispersed
Cind Cind-Chr2:340049430 Cind1g02258 Cind-Chr1:49249110 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cind1g00521 . 47 484 MRS2 gene family AT3G19640 59.519 5.92e-175 499.0
Cind1g00524 . 344 484 MRS2 gene family AT3G19640 65.068 6.53e-59 188.0
Cind1g00525 . 47 318 MRS2 gene family AT3G19640 53.242 1.96e-85 264.0
Cind1g02258 . 1 442 MRS2 gene family AT1G16010 80.761 0.0 713.0
Cind1g03619 . 273 398 MRS2 gene family AT3G19640 39.535 4.32e-16 71.2
Cind1g03621 ACH 67 484 MRS2 gene family AT3G19640 55.809 7.16e-147 424.0
Cind1g06603 . 273 398 MRS2 gene family AT3G19640 39.535 4.32e-16 71.2
Cind1g06605 . 47 484 MRS2 gene family AT3G19640 55.338 1.75e-154 446.0
Cind2g03082 . 88 175 MRS2 gene family AT5G64560 64.773 6.80e-28 104.0
Cind2g03343 . 164 248 MRS2 gene family AT3G19640 39.773 1.70e-07 49.3
Cind2g03507 . 123 314 MRS2 gene family AT5G22830 73.575 9.73e-95 287.0
Cind2g04265 . 1 421 MRS2 gene family AT2G03620 63.721 7.82e-174 491.0
Cind2g05006 . 1 442 MRS2 gene family AT1G16010 73.661 0.0 619.0
Cind3g03494 . 28 386 MRS2 gene family AT5G09690 70.752 1.88e-177 496.0
Cind3g03495 . 17 386 MRS2 gene family AT5G09690 64.96 6.81e-162 456.0
Cind3g04085 . 1 436 MRS2 gene family AT3G58970 67.325 0.0 569.0
Cind3g04683 . 47 484 MRS2 gene family AT3G19640 66.813 0.0 580.0
Cind4g02711 . 88 175 MRS2 gene family AT5G64560 65.909 6.17e-27 104.0
Cind4g05260 . 1 415 MRS2 gene family AT1G80900 79.236 0.0 656.0
Cind4g05263 . 164 312 MRS2 gene family AT1G16010 76.821 3.19e-72 221.0
Cind4g05268 . 44 197 MRS2 gene family AT1G80900 71.154 4.86e-71 224.0
Cind6g02997 . 1 386 MRS2 gene family AT5G09690 66.329 0.0 506.0
Cind6g03848 . 368 401 MRS2 gene family AT1G16010 73.529 2.38e-09 50.1
Cind7g01659 . 123 459 MRS2 gene family AT5G22830 81.009 0.0 533.0
Cind8g00793 ACH 273 375 MRS2 gene family AT3G19640 41.905 3.03e-13 68.2
Cind8g00794 . 47 484 MRS2 gene family AT3G19640 61.978 0.0 530.0
Cind8g00795 . 5 386 MRS2 gene family AT5G09690 67.013 2.07e-178 499.0
Cind8g02341 . 47 484 MRS2 gene family AT3G19640 58.758 2.21e-163 468.0
Cind8g03573 . 202 321 MRS2 gene family AT5G09690 71.667 8.47e-48 155.0
Cind9g00405 . 33 382 MRS2 gene family AT5G09690 75.921 0.0 529.0