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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00129 ATGGCATATCAAGTGTTGGAGCGTAGCCAACCAGTTGATCTCTCTAAGCACCCATCGGGAATTGTTCCCACTCTTCAGAATATTGTGTCTACTGTCGATCTTGATTGCAAGCTAAACCTGAACGTGATTGCACAGAAAGCTCGTAATGCAGAATACAACCCCAAGCGTTTTGCTGCTGTTATCATGAGGATACGAGAACCAAAAACAACAGCTTTAATATTTTCTTCCGGGAGAATGGATTTCAAGATTCAAAATATCGTTGGCTCATGTGATGTAAAATTTCCCATTAGGCTTGAAGAGCTTGATGAGTCCTCTCACAGTGCCTTTACAAGTTATGAACCAGAACTGTTTCCTGGACTGATATATCGAATGAAGCAACCGAAAATCGTTCTGCTTATTTTTTTATCTGGAAAGATTGTTCTCACGGGAGCCAAGATTCTTGATATCGATGAAATGGTTTTGTATCGGGTGAAAGTTGACTTTAGGATTGGACTTGGTTGTGAAGGGCGAAAGTGTAAATATCTTCGTGGAAATAGAATAGAGGAAGTGAAGGCTAATGCCACTACTTTCCCTTTTTTGTAA 582 40.21 MAYQVLERSQPVDLSKHPSGIVPTLQNIVSTVDLDCKLNLNVIAQKARNAEYNPKRFAAVIMRIREPKTTALIFSSGRMDFKIQNIVGSCDVKFPIRLEELDESSHSAFTSYEPELFPGLIYRMKQPKIVLLIFLSGKIVLTGAKILDIDEMVLYRVKVDFRIGLGCEGRKCKYLRGNRIEEVKANATTFPFL 193
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00129 193 SUPERFAMILY TATA-box binding protein-like 79 147 - -
Cind3g00129 193 Gene3D - 12 79 IPR012295 -
Cind3g00129 193 Gene3D - 84 146 IPR012295 -
Cind3g00129 193 PRINTS Transcription initiation factor TFIID signature 68 86 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Cind3g00129 193 PRINTS Transcription initiation factor TFIID signature 49 68 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Cind3g00129 193 PRINTS Transcription initiation factor TFIID signature 25 40 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Cind3g00129 193 PANTHER TATA-BOX BINDING PROTEIN 80 146 IPR000814 GO:0003677(InterPro)|GO:0006352(PANTHER)|GO:0006352(InterPro)|GO:0016251(PANTHER)|GO:0140223(PANTHER)
Cind3g00129 193 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 80 145 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Cind3g00129 193 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 23 79 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Cind3g00129 193 SUPERFAMILY TATA-box binding protein-like 21 79 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00129 K03120 transcription initiation factor TFIID TATA-box-binding protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
67277 Cind1g02900 Cind3g00129
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:357542682 Cind3g05938 Cind-Chr3:357967138 dispersed
Cind Cind-Chr5:173785164 Cind3g00129 Cind-Chr3:357542682 transposed
Cind Cind-Chr3:357542682 Cind8g01461 Cind-Chr8:236054823 wgd