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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00131 ATGGCTTCATCAAGTGGCACAATGACATCTTCTGGTGGATCAGAACTTCAAGAAGAAATGGACCAAAGGAAAAAAAGACGAATGATATCGAACCGAGAATCAGCAAGAAGATCAAGAATGAGGAAACAAAAGCATTTGAACGATTTAATGACTCAACTGAGTCAACTCAGATCGGAGATCAACTCGGTCATGTCTAATATTAGTATGACAACTCAGCATTACATGAGTGTTGAGGCTGAGAACTCGGTTTTAAGAGCTCAAGCAGCTGAGCTCGGTCATAGACTTGAGTCGCTTAATGAGATAATCGCGGTTATGGAGCGACCCGTTGAGATTGGAAGCGCGTTTGGAGATGAACTCGCTGAGTTCGGGGGCGAGTTTGTGAATGACTCACTGAGTTATCTTTACTCTTGTCAACCTATTTTGGCTTCTGCTGACATGAACATGTACTAA 450 42.67 MASSSGTMTSSGGSELQEEMDQRKKRRMISNRESARRSRMRKQKHLNDLMTQLSQLRSEINSVMSNISMTTQHYMSVEAENSVLRAQAAELGHRLESLNEIIAVMERPVEIGSAFGDELAEFGGEFVNDSLSYLYSCQPILASADMNMY 149
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00131 149 PANTHER BZIP TRANSCRIPTION FACTOR 44 4 107 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Cind3g00131 149 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 84 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cind3g00131 149 MobiDBLite consensus disorder prediction 1 43 - -
Cind3g00131 149 MobiDBLite consensus disorder prediction 1 16 - -
Cind3g00131 149 Gene3D - 21 104 - -
Cind3g00131 149 CDD bZIP-plant-GBF1 24 75 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cind3g00131 149 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cind3g00131 149 SMART brlzneu 19 83 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cind3g00131 149 MobiDBLite consensus disorder prediction 17 36 - -
Cind3g00131 149 FunFam BZIP transcription factor 21 72 - -
Cind3g00131 149 SUPERFAMILY Leucine zipper domain 23 76 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cind3g00131 149 Coils Coil 39 66 - -
Cind3g00131 149 Pfam bZIP transcription factor 22 79 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00131 K25786 bZIP transcription factor 1/2/11/44/53
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Event-related genes

Select Gene_1 Gene_2 Event_name
67276 Cind1g02898 Cind3g00131
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr1:345557909 Cind3g00131 Cind-Chr3:357595769 dispersed
Cind Cind-Chr3:357595769 Cind3g05942 Cind-Chr3:358082092 dispersed
Cind Cind-Chr1:345890194 Cind3g00131 Cind-Chr3:357595769 wgd
Cind Cind-Chr3:357595769 Cind8g01916 Cind-Chr8:236278178 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cind1g00282 . 22 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 43.921 8.29e-80 248.0
Cind1g00379 . 22 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 43.921 8.29e-80 248.0
Cind1g00683 ACH 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 51.842 4.87e-99 294.0
Cind1g02811 ACH 268 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 65.772 4.90e-57 181.0
Cind1g02898 ACH 21 159 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34590 47.857 2.08e-38 126.0
Cind1g02905 ACH 37 144 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 54.054 2.88e-34 115.0
Cind1g03200 . 25 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 75.781 5.72e-60 181.0
Cind1g03228 . 179 273 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 75.789 3.44e-39 144.0
Cind1g03564 ACH 37 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 50.355 3.60e-37 124.0
Cind1g04461 . 1 241 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 48.846 3.76e-74 224.0
Cind1g05443 . 114 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 25.806 1.01e-10 59.3
Cind1g05450 . 114 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 25.346 9.57e-09 53.5
Cind1g05452 . 120 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 27.363 7.27e-08 50.1
Cind1g07193 . 211 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 53.333 2.18e-23 97.8
Cind1g07631 . 216 287 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 72.222 8.25e-28 110.0
Cind2g00208 ACH 11 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 50.0 9.32e-41 133.0
Cind2g00542 . 1 553 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 55.743 1.61e-176 508.0
Cind2g00793 . 1 481 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 59.615 0.0 573.0
Cind2g00795 . 85 306 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 41.423 4.86e-28 108.0
Cind2g00983 . 34 105 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 65.753 9.03e-25 95.1
Cind2g01433 . 1 306 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 51.672 3.45e-94 280.0
Cind2g01676 . 109 307 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 30.198 3.71e-17 77.0
Cind2g02893 . 29 110 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 63.415 3.52e-28 103.0
Cind2g04667 . 281 345 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 44.872 4.93e-10 55.5
Cind2g05054 . 1 228 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 64.831 2.64e-104 303.0
Cind2g05058 . 1 228 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 64.831 1.34e-104 303.0
Cind2g05382 . 16 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 48.961 8.58e-83 252.0
Cind3g00131 ACH 19 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 47.651 7.11e-38 125.0
Cind3g00254 . 191 415 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 51.502 1.69e-77 238.0
Cind3g00423 . 8 240 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 45.868 2.63e-56 177.0
Cind3g01144 . 42 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 47.934 1.23e-22 90.9
Cind3g01326 ACH 1 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 49.157 9.92e-104 310.0
Cind3g01734 . 129 280 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 50.971 9.03e-44 148.0
Cind3g01772 . 109 318 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 26.54 1.08e-16 75.1
Cind3g01901 . 106 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G44080 42.723 4.24e-38 132.0
Cind3g03252 . 1 431 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G19290 44.444 4.22e-91 280.0
Cind3g03110 . 12 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 52.322 4.86e-91 271.0
Cind3g04073 . 42 316 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 59.091 1.74e-94 281.0
Cind3g04102 . 211 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 53.333 4.55e-23 97.1
Cind3g04881 . 8 142 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 57.037 7.77e-52 159.0
Cind3g05942 . 24 159 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34590 48.571 4.95e-36 120.0
Cind4g00159 . 206 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 50.0 1.97e-15 69.7
Cind4g00460 . 62 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 41.667 9.51e-36 127.0
Cind4g00920 . 29 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 60.432 1.11e-49 157.0
Cind4g01051 ACH 26 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 53.009 1.92e-100 297.0
Cind4g01737 . 49 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 50.0 9.75e-21 81.6
Cind4g01920 . 24 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 43.257 1.50e-72 229.0
Cind4g02279 ACH 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 55.325 9.22e-109 318.0
Cind4g03343 . 9 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 49.091 8.01e-46 146.0
Cind4g04853 ACH 11 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 52.0 4.59e-115 340.0
Cind5g00771 . 23 135 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G34590 33.333 5.77e-19 76.3
Cind5g01251 . 1 388 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 59.898 1.66e-145 417.0
Cind5g01949 . 98 277 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 51.031 3.58e-55 180.0
Cind5g05359 . 21 326 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 37.202 9.63e-44 155.0
Cind6g00922 . 370 462 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G21230 34.409 1.15e-08 51.6
Cind6g01022 . 1 440 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G36270 47.835 6.33e-108 324.0
Cind6g01052 ACH 4 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 48.642 2.32e-97 293.0
Cind6g01607 . 95 179 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 54.118 5.01e-22 86.3
Cind6g01745 . 143 259 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 57.627 4.87e-30 113.0
Cind6g02148 . 1 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 49.55 2.93e-87 261.0
Cind6g02718 . 136 267 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 52.899 1.35e-29 119.0
Cind6g02777 . 53 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 65.517 6.06e-43 140.0
Cind6g03238 . 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 57.366 2.96e-171 489.0
Cind6g03670 . 29 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 40.752 1.21e-61 195.0
Cind7g00654 . 155 218 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G42990 60.0 8.23e-18 80.5
Cind7g01502 . 142 315 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G44080 47.514 1.06e-40 139.0
Cind7g02221 ACH 22 214 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G22850 34.021 1.76e-26 99.4
Cind7g03702 . 213 293 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 49.383 3.66e-18 80.9
Cind7g04301 . 27 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 69.419 6.64e-151 430.0
Cind7g04678 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.152 1.74e-178 495.0
Cind7g04726 . 147 469 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G19490 37.015 2.81e-40 147.0
Cind7g05201 ACH 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 54.011 1.49e-110 324.0
Cind8g00087 . 41 279 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 29.317 1.17e-17 80.9
Cind8g00919 . 5 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 50.299 7.07e-49 154.0
Cind8g01781 . 138 620 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56660 39.841 6.47e-74 244.0
Cind8g01916 . 5 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 50.299 7.07e-49 154.0
Cind8g03295 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 63.855 4.67e-144 412.0
Cind8g03807 . 282 345 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 45.455 1.01e-10 55.5
Cind9g00027 ACH 5 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 40.625 2.51e-24 91.7
Cind9g00356 . 1 282 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 71.986 1.41e-144 407.0
Cind9g01098 . 1 246 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 53.558 5.06e-88 259.0
Cind9g01249 . 218 296 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 50.633 7.39e-17 71.6
Cind9g01640 . 1 185 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G32150 68.649 1.56e-77 243.0
Cind9g02149 . 114 239 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 26.531 4.35e-11 58.2
Cind9g02222 . 109 320 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 27.315 1.55e-16 75.5
Cind9g02654 . 54 517 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 51.245 9.70e-124 370.0
Cind9g02725 . 88 452 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G68640 61.804 6.56e-138 398.0
Cind9g03617 . 25 158 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 51.111 2.38e-35 119.0
Cind9g03618 . 23 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 52.703 1.14e-40 133.0
Cind9g04372 . 52 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 68.966 1.39e-48 154.0
Cind9g04468 ACH 1 214 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 45.614 1.34e-45 152.0
Cind9g04469 . 218 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 80.0 3.10e-40 133.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cind bZIP_1 1.9e-08 CL0018 TF bZIP