AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00136 ATGCAAGTGGTGGAAAAAAGACCTTTTTATTTGTATAGCAAGGCTCAGATAACAAGAAATGTGGAAGCTTATAAAGAGGCTTTGGAGGGTTTGGATGGAATTAGTGTTATTGGTTATGCTGTAAAAGCTAATAATAATTTCTTGATTTTGAACCATTTGAGGAGTTTGGGTTGTGGGGCTGTTTTAGTTAGTGGGAATGAGTTGAGGTTGGCTTTGAAAGCTGGTTTTGATCCTACAAGGTGTATTTTTAATGGAAACGGGAAGCTTTTGGAGGATCTTGTTCTTGCTGCTCAAGAAGGTGTCTTTGTTAACATAGACAGTGAATTTGATTTGGATAATATTGTAGCGGCTGCAAGAATTGCTGGAAAGCAAGTCAATGTATTGCTCCGAATCAATCCTGATGTTGACCCTCAGGTCCATCCTTATGTTGCCACCGGGAACAAAAACTCCAAGTTTGGTATAAGAAATGAGAAATTGCAATGGTTTTTGGATCAAGTGAAGTCGTATCCAGATGAACTTAAGCTAGTTGGTGCTCATTGCCATCTTGGATCCACCATTACCAAGGTTGACATATTTAGAGACGCTGCAGAAATTATGGTAAAGTTCATTGACGAAATTCGAGCCCAAGGGTTTGATATTAGTTATTTGAACATTGGAGGTGGTCTTGGGATTGATTATTATCATACTGGTACCGTTCTTCCAACTCCAAGAGACCTCATCGACACGGTGCGGGATCTAGTCAAGTCGCGAAACCTTAATCTGATTATTGAACCCGGGAGGTCACTTATTGCAAATACTTGCTGCCTTGTTAACCGCGTCACTGGTGTCAAAACAAATGGCACGAAAAACTTTATTGTGATTGATGGCAGCATGGCTGAACTTATCCGTCCTAGTTTGTACGATGCTTATCAACACATAGAGCTAGTTTCTCCTCCACCACCTGATGCTGCTGTTTCAACTTTCGACGTTGTGGGCCCGGTTTGCGAGTCTGCCGATTTCTTGGGAAAGAATAGGGAACTTCCTGCTCCAGCCAGGGGTTCTGGGCTTGTAGTTCATGATGCGGGTGCTTACTGCATGAGCATGGCTTCAACTTACAACCTCAAGATGCGCCCACCTGAGTATTGGGTTGAAGAAGATGGATCAGTTTCCAAAATCAGGCATGGGGAGACTTTTGATGATCATATGAGATACTTCGAGGGACTCTAG 1206 42.45 MQVVEKRPFYLYSKAQITRNVEAYKEALEGLDGISVIGYAVKANNNFLILNHLRSLGCGAVLVSGNELRLALKAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVAAARIAGKQVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDQVKSYPDELKLVGAHCHLGSTITKVDIFRDAAEIMVKFIDEIRAQGFDISYLNIGGGLGIDYYHTGTVLPTPRDLIDTVRDLVKSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPPDAAVSTFDVVGPVCESADFLGKNRELPAPARGSGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVSKIRHGETFDDHMRYFEGL 401
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00136 401 FunFam Diaminopimelate decarboxylase 14 261 - -
Cind3g00136 401 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 208 223 IPR022657 -
Cind3g00136 401 PANTHER DIAMINOPIMELATE DECARBOXYLASE 5 397 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Cind3g00136 401 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 15 264 IPR022644 GO:0003824(InterPro)
Cind3g00136 401 PRINTS Diaminopimelate decarboxylase signature 57 74 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cind3g00136 401 PRINTS Diaminopimelate decarboxylase signature 145 154 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cind3g00136 401 PRINTS Diaminopimelate decarboxylase signature 282 300 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cind3g00136 401 PRINTS Diaminopimelate decarboxylase signature 365 387 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cind3g00136 401 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 265 355 IPR022643 GO:0003824(InterPro)
Cind3g00136 401 SUPERFAMILY Alanine racemase C-terminal domain-like 241 396 IPR009006 GO:0003824(InterPro)
Cind3g00136 401 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 39 57 IPR022653 -
Cind3g00136 401 Gene3D Alanine racemase 14 261 IPR029066 -
Cind3g00136 401 CDD PLPDE-III-DapDC 8 376 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cind3g00136 401 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 8 395 IPR009006 GO:0003824(InterPro)
Cind3g00136 401 NCBIfam diaminopimelate decarboxylase 8 396 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cind3g00136 401 Hamap Diaminopimelate decarboxylase [lysA]. 1 399 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cind3g00136 401 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 39 57 IPR000183 GO:0003824(InterPro)
Cind3g00136 401 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 355 368 IPR000183 GO:0003824(InterPro)
Cind3g00136 401 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 59 71 IPR000183 GO:0003824(InterPro)
Cind3g00136 401 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 172 185 IPR000183 GO:0003824(InterPro)
Cind3g00136 401 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 254 273 IPR000183 GO:0003824(InterPro)
Cind3g00136 401 SUPERFAMILY PLP-binding barrel 7 265 IPR029066 -
Cind3g00136 401 FunFam Diaminopimelate decarboxylase 243 395 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00136 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:357805591 Cind3g05951 Cind-Chr3:358406073 dispersed