AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind3g00393 | ATGTCATATCTTCTCAAGAAGCTTCTAGAAGCCGCAACAGCGCGGTTAAACACATCCTCTTCAAATAATGAACAAGTCCAATCATCTGAGAAAATGATCATATGTTGTTCATCATCATCATCGATCGGTGAATTTGATCGGATACCATATGATGTGCTTATGCAGATATTGAAATTGATTGGACCTAAGGAAGTAGCTAAGATGAGTGTTGTATGTAAGTCATGGAAGCTGGTTGTTAGTGATAATATGTTGTGGATTGCTTTTTTGAATGATAACAATGATCCTTATGATTCCATGTTTTTCGCCGAAACCAGTTTAAGGAGCGGATATCCTCTCAGAACATATCCTTCTCAGATGCAATCATTTATGCAAATTTATGGTCAGCGAGCACAGGTTCCTGGAGCTATTATCATTGATGGTGGTTCGGGCTACTGCAAATTTGGTTGGAGCAAATACAATTCTCCATCTGGGCGAGCTGCAACATTTTTGGAATTTGGTAATATCGAGGCTCCATTGTACTCTAGACTTCGCCATTTTTATGCAACAATATATAGCAGGATGCAGGTGAAATCATCCTCACAGCCAACGGTTGTTTCAATTCCAATTACTCATTGTGGTGATACAGAAGCTGCTAAAACTGCTAGAAGGCAACTTAAGGAAGCCATCCACTCAGCAATGTTTGACATGAATGTTCCTTCTGTTTGTGCAGTCAGTCAGGCAACTCTAGCTTTATTTGCAGCAAGAAAAACTTCAGGAATCCTTGTTAATATTGGTTTTAATCAAACATCTGTTGTACCAATTTTGCATGGTAAGATAATGTACAAAGTGGGTGTGGAAGTTATGGAAGTTGGGGCCGTAAAGCTTACAGCATACCTTAGGGAGCAAATGCAGCAAAGAAATCTACCCTTTTCTTCGTTATACACAGTGAGAGCATTAAAAGAGAATCTTTGTTATGTTGCTTTGGACTATGATGCCGAATTGAGGAAAGATACAGAAGCGTCGTATGAAGTTCCTGTTGAGGGTTGGTTTAGTCTTAAGCAAGAGCGCTTTCGAACAGGAGAGATTTTATTTCAGCCCCGTATTTCAGGATTGAGTGCAATGGGTTTGCATCAAGCCGTGGCCAATTGCATTGAACATTGCCAAGCTGCAGGTTTAACCCCCGATGATTCTTGGTTCAAGACCATTGTCTTAGCTGGGGGTAGCGCGTGTTTACCAGGAATAGTAGAAAGATTAGATAAGGAACTGCATGTTCTTCTTCCACCATCCATATCCAATGGAATTCGTGTTATTCCACCCCCATATGGTGCAGATTCTGCATGGCATGGGGCAAAGCTTCTCAGCAATTTGAGCACCTTCCCTAATTCCTGGTGCCTCAGCAAAAAGGATTTCCGACCGAAGTCGAGAAGAAACTTCTTATGGTGA | 1422 | 41.14 | MSYLLKKLLEAATARLNTSSSNNEQVQSSEKMIICCSSSSSIGEFDRIPYDVLMQILKLIGPKEVAKMSVVCKSWKLVVSDNMLWIAFLNDNNDPYDSMFFAETSLRSGYPLRTYPSQMQSFMQIYGQRAQVPGAIIIDGGSGYCKFGWSKYNSPSGRAATFLEFGNIEAPLYSRLRHFYATIYSRMQVKSSSQPTVVSIPITHCGDTEAAKTARRQLKEAIHSAMFDMNVPSVCAVSQATLALFAARKTSGILVNIGFNQTSVVPILHGKIMYKVGVEVMEVGAVKLTAYLREQMQQRNLPFSSLYTVRALKENLCYVALDYDAELRKDTEASYEVPVEGWFSLKQERFRTGEILFQPRISGLSAMGLHQAVANCIEHCQAAGLTPDDSWFKTIVLAGGSACLPGIVERLDKELHVLLPPSISNGIRVIPPPYGADSAWHGAKLLSNLSTFPNSWCLSKKDFRPKSRRNFLW | 473 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind3g00393 | 473 | SMART | fbox-2 | 48 | 88 | IPR001810 | GO:0005515(InterPro) | |
| Cind3g00393 | 473 | Pfam | Actin | 306 | 463 | IPR004000 | - | |
| Cind3g00393 | 473 | PANTHER | ACTIN | 145 | 463 | IPR004000 | - | |
| Cind3g00393 | 473 | Gene3D | - | 34 | 111 | - | - | |
| Cind3g00393 | 473 | SUPERFAMILY | Actin-like ATPase domain | 134 | 255 | IPR043129 | - | |
| Cind3g00393 | 473 | SUPERFAMILY | F-box domain | 40 | 96 | IPR036047 | GO:0005515(InterPro) | |
| Cind3g00393 | 473 | Gene3D | - | 181 | 463 | - | - | |
| Cind3g00393 | 473 | SUPERFAMILY | Actin-like ATPase domain | 249 | 457 | IPR043129 | - | |
| Cind3g00393 | 473 | Pfam | F-box domain | 45 | 86 | IPR001810 | GO:0005515(InterPro) | |
| Cind3g00393 | 473 | CDD | NBD-sugar-kinase-HSP70-actin | 136 | 281 | - | - | |
| Cind3g00393 | 473 | Gene3D | Actin; Chain A, domain 4 | 283 | 366 | - | - | |
| Cind3g00393 | 473 | Gene3D | - | 240 | 438 | - | - | |
| Cind3g00393 | 473 | ProSiteProfiles | F-box domain profile. | 42 | 88 | IPR001810 | GO:0005515(InterPro) | |
| Cind3g00393 | 473 | SMART | actin-3 | 133 | 471 | IPR004000 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind3g00393 | K16616 | actin-related protein 8, plant |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 67756 | Cind2g05509 | Cind3g00393 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr2:352606670 | Cind3g00393 | Cind-Chr3:303630273 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cind1g00415 | . | 124 | 257 | Cytoskeleton gene family | AT3G46520 | 75.362 | 3.16e-66 | 211.0 | |
| Cind1g01071 | ACH | 1 | 377 | Cytoskeleton gene family | AT3G12110 | 96.817 | 0.0 | 764.0 | |
| Cind1g01824 | . | 54 | 117 | Cytoskeleton gene family | AT4G29350 | 67.692 | 5.08e-26 | 92.8 | |
| Cind1g02638 | ACH | 153 | 229 | Cytoskeleton gene family | AT3G46520 | 80.519 | 2.52e-39 | 132.0 | |
| Cind1g05444 | . | 56 | 135 | Cytoskeleton gene family | AT3G12110 | 82.5 | 2.90e-45 | 148.0 | |
| Cind1g06319 | . | 1 | 60 | Cytoskeleton gene family | AT3G12110 | 93.333 | 6.18e-34 | 116.0 | |
| Cind1g07221 | . | 121 | 160 | Cytoskeleton gene family | AT5G09810 | 67.5 | 9.81e-10 | 50.4 | |
| Cind2g00480 | . | 26 | 58 | Cytoskeleton gene family | AT3G12110 | 81.818 | 6.09e-13 | 61.6 | |
| Cind2g00958 | . | 121 | 182 | Cytoskeleton gene family | AT3G12110 | 44.776 | 3.07e-09 | 50.8 | |
| Cind2g05509 | ACH | 91 | 364 | Cytoskeleton gene family | AT3G12110 | 34.021 | 2.03e-41 | 149.0 | |
| Cind3g00171 | . | 246 | 368 | Cytoskeleton gene family | AT5G09810 | 32.812 | 1.20e-16 | 79.3 | |
| Cind3g00393 | ACH | 88 | 358 | Cytoskeleton gene family | AT3G12110 | 31.359 | 8.35e-39 | 143.0 | |
| Cind4g00133 | . | 46 | 129 | Cytoskeleton gene family | AT5G59370 | 67.857 | 9.04e-34 | 119.0 | |
| Cind4g00140 | . | 46 | 81 | Cytoskeleton gene family | AT5G09810 | 77.778 | 3.82e-12 | 59.7 | |
| Cind4g00182 | . | 1 | 64 | Cytoskeleton gene family | AT5G09810 | 39.062 | 1.28e-06 | 47.0 | |
| Cind4g00847 | . | 152 | 292 | Cytoskeleton gene family | AT3G46520 | 82.27 | 8.45e-81 | 241.0 | |
| Cind4g01349 | . | 246 | 368 | Cytoskeleton gene family | AT5G09810 | 32.812 | 4.35e-19 | 82.0 | |
| Cind4g01769 | ACH | 1 | 377 | Cytoskeleton gene family | AT5G09810 | 96.286 | 0.0 | 764.0 | |
| Cind5g02108 | . | 1 | 46 | Cytoskeleton gene family | AT5G59370 | 65.217 | 9.79e-13 | 62.8 | |
| Cind5g02132 | . | 1 | 35 | Cytoskeleton gene family | AT5G59370 | 77.143 | 3.49e-13 | 61.6 | |
| Cind5g02159 | . | 1 | 31 | Cytoskeleton gene family | AT5G09810 | 83.871 | 7.39e-11 | 55.8 | |
| Cind5g03098 | . | 1 | 46 | Cytoskeleton gene family | AT5G59370 | 65.217 | 9.15e-13 | 63.2 | |
| Cind5g04776 | . | 121 | 152 | Cytoskeleton gene family | AT3G12110 | 81.25 | 1.24e-11 | 57.8 | |
| Cind6g01911 | . | 18 | 87 | Cytoskeleton gene family | AT5G09810 | 70.0 | 1.29e-25 | 96.7 | |
| Cind6g02126 | . | 214 | 377 | Cytoskeleton gene family | AT3G46520 | 95.122 | 1.31e-113 | 325.0 | |
| Cind6g04093 | . | 26 | 57 | Cytoskeleton gene family | AT3G12110 | 75.0 | 1.08e-09 | 56.6 | |
| Cind7g00661 | . | 112 | 377 | Cytoskeleton gene family | AT5G09810 | 60.662 | 9.44e-118 | 340.0 | |
| Cind7g00662 | . | 84 | 377 | Cytoskeleton gene family | AT5G09810 | 61.667 | 8.72e-133 | 380.0 | |
| Cind7g00202 | . | 7 | 377 | Cytoskeleton gene family | AT5G09810 | 36.911 | 2.31e-69 | 220.0 | |
| Cind7g01926 | . | 134 | 297 | Cytoskeleton gene family | AT5G09810 | 80.488 | 3.48e-84 | 250.0 | |
| Cind7g01928 | . | 1 | 377 | Cytoskeleton gene family | AT5G09810 | 98.939 | 0.0 | 775.0 | |
| Cind7g03756 | . | 18 | 133 | Cytoskeleton gene family | AT5G09810 | 50.862 | 2.06e-28 | 102.0 | |
| Cind8g00289 | . | 1 | 377 | Cytoskeleton gene family | AT5G09810 | 77.719 | 0.0 | 615.0 | |
| Cind8g00396 | . | 26 | 62 | Cytoskeleton gene family | AT3G12110 | 75.676 | 7.05e-13 | 63.9 | |
| Cind8g01244 | . | 25 | 58 | Cytoskeleton gene family | AT3G12110 | 85.294 | 3.64e-13 | 63.9 | |
| Cind8g03276 | . | 21 | 377 | Cytoskeleton gene family | AT5G59370 | 98.039 | 0.0 | 728.0 | |
| Cind9g01028 | . | 192 | 292 | Cytoskeleton gene family | AT3G46520 | 83.168 | 2.23e-54 | 171.0 | |
| Cind9g01258 | . | 118 | 229 | Cytoskeleton gene family | AT3G46520 | 58.824 | 2.63e-38 | 133.0 |