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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00399 ATGTACGTTGTCAATGCTGGCTCGACCTTCAAAAGATATATATGGCCTGCTGCTCAAAAGTTTCTAGATCCGAAAACTATTGCAAAAATTCAGGTTTTGGAATCTAAGTCATTGGGGAAACTACTTGAAGTCATTGACCCAAGTCAATTGCCTGATTTCCTTGGTGGTTCATGCACATGTCCTGGCGAAGCCGGCTGTCTTAGGTCTAACAAGGGTCCATGGAACGACCCTGAAATCATGAAGGTATAG 249 43.37 MYVVNAGSTFKRYIWPAAQKFLDPKTIAKIQVLESKSLGKLLEVIDPSQLPDFLGGSCTCPGEAGCLRSNKGPWNDPEIMKV 82
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00399 82 Pfam CRAL-TRIO domain 1 56 IPR001251 -
Cind3g00399 82 SUPERFAMILY CRAL-TRIO domain 1 81 IPR036865 -
Cind3g00399 82 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 1 81 IPR051026 -
Cind3g00399 82 Gene3D - 1 82 IPR036865 -
Cind3g00399 82 CDD SEC14 1 56 IPR001251 -
Cind3g00399 82 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 1 62 IPR001251 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00399 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:303610638 Cind8g03084 Cind-Chr8:237467013 dispersed
Cind Cind-Chr3:303610638 Cind2g05510 Cind-Chr2:352602321 transposed