AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00473 ATGTTCCATTCAGCTTCCACCAGCAAACCACAATCCTCACCACCATCAACCACTGATGAATCATCGCCACCATCACGCTCTAGAAACCCTCAGGTACGTCTAGCACTTTACGTAGCAATGGCACAAGCAGGTTTAGGTTTTGCAATCTTTGTGATATATGGTTTATCCAGATTACTTGAAGAATATTTAAGACCAATATTATGGGCTGTGCTTTGTTCTATACCGTTACGTGGTATCCAAGAAACCCTTGTGTTGTTTTGGTCCGAACCGTTAGGCAAAGGTCTAGTTGAAACTATATTAGCTATCCCTTTTTCTATATACAAGGTTTTTGTTGAGACACTTGTTGAGATTAAAGATTTCTTATCTAAGCTAGTAACTCGCCGTAAGACTAATACACCGGATAAGAAACAAAGTGGCTTTTCTGTTTTGGTGAAATGGTTGGTATCTTTTTGGGTTTTTGTTATTGTTAATGAAATATTTGGTTTGTTTGGTGGTGTCATCTTGTTGGGGTTAGGGTTTATGTTTACTTTTAGTAATGTGAAGTCTAAGATGTCGCGGTTCTGGGGTCTTGAGTTAAAAAGTAACGTTTACTCAGTTCTTTTGACTAAAAGGATTTTGATTAGGCTGGAAACTATTGTGGCGATCGGGTTGATTGTAGGAATGATTTTGGGATCTTTTGTTGGGATTGTGTTTTTTTCGTATAAGATTGGGGTTGAAGGGAAAGACGTGGTTTTTTCAATTAAGTCACATGTTGAAGAGAATAATTACGCTGAGAAAATTGGATTAAAGCAATGGATGGATGATAATAATGTGCCGGAAATGGTGGATAGGTATACTATTAAGTTATATGAAACAGTAAACGAACACGTTGATAGTTTAGCAATGGAGTATAACGTGACGGAAATTGTTCAAGAAATGAAACAATTAATTACACTATTTTTTAACCAAGGTAAATATACTGAAAAGATATTAAGTTTAAAGAAGGTGGTTATTAATCGTGAATGGTCAGCAATTTATCCAGAAATCAATGCTATTTTAAACGAGGTACAAGTGAGTAAAGACGAGATGATTAAGAAAGCGAAAGCAATTGTTTTTCAAGGAACAGATGTGCTACAACGTGTGCTTGCAAGTAGTAAATCGGTAGTGGGTGGTAGTACTAAGCTTGTTGCTATAGTCATCAGTTCAATATTCTCTAGAGCAGCCGGAATTTTAGACTTTGTGTCTCAAGCGATGGTATTCATTGGGGTTTTGTATGCCTTGATAACATCAGATTCTGGCGGTGTTACTGAACACGTAATGCATATGATACCAATGTCGAGATCTGCTAGGACAAGATGTGTTGAGGTTCTTGATAAAGCTATTTCCGGGGTTCTTTTGGCATCAGCAGAGATTGCGGTTTTTCAAGGGTGTCTTACTTGGCTTTTGTTCAAACTATTTAATATTCATTTCTTATACATGTCAACACTTCTTGCGTTTATCAATCCTTTGCTTCCGATATTTCCATTCTTTTTCTCCACGATCCCTGCAGCATTGCAGTTAGTACTTGAAGGTAGATATGTTCTTGCGGTTTGCTTGTCGATTCTTCATTTTTTGCTTACAGACTATGGTACTGCCGAGATCCAAGAGAGTATCCCCGGTTATAATGCATATCTCACTGGTCTTAGCATCATCGGTGGAGTGGCATTGTTCCCCTCTGCAATGGAGGGAGCGATAATGGGGCCACTGATAATGACTCTTGTTATTGGCCTCAAAGATTTGTATGTAGAATTTGTTTTGGATGAACTAAAAGAAGAAATAGAGGAGTAG 1806 37.82 MFHSASTSKPQSSPPSTTDESSPPSRSRNPQVRLALYVAMAQAGLGFAIFVIYGLSRLLEEYLRPILWAVLCSIPLRGIQETLVLFWSEPLGKGLVETILAIPFSIYKVFVETLVEIKDFLSKLVTRRKTNTPDKKQSGFSVLVKWLVSFWVFVIVNEIFGLFGGVILLGLGFMFTFSNVKSKMSRFWGLELKSNVYSVLLTKRILIRLETIVAIGLIVGMILGSFVGIVFFSYKIGVEGKDVVFSIKSHVEENNYAEKIGLKQWMDDNNVPEMVDRYTIKLYETVNEHVDSLAMEYNVTEIVQEMKQLITLFFNQGKYTEKILSLKKVVINREWSAIYPEINAILNEVQVSKDEMIKKAKAIVFQGTDVLQRVLASSKSVVGGSTKLVAIVISSIFSRAAGILDFVSQAMVFIGVLYALITSDSGGVTEHVMHMIPMSRSARTRCVEVLDKAISGVLLASAEIAVFQGCLTWLLFKLFNIHFLYMSTLLAFINPLLPIFPFFFSTIPAALQLVLEGRYVLAVCLSILHFLLTDYGTAEIQESIPGYNAYLTGLSIIGGVALFPSAMEGAIMGPLIMTLVIGLKDLYVEFVLDELKEEIEE 601
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00473 601 Pfam AI-2E family transporter 339 528 IPR002549 -
Cind3g00473 601 PANTHER TRANSMEMBRANE PROTEIN 1 596 IPR002549 -
Cind3g00473 601 MobiDBLite consensus disorder prediction 1 28 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00473 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:299596790 Cind3g00472 Cind-Chr3:299601285 tandem
Cind Cind-Chr2:348284170 Cind3g00473 Cind-Chr3:299596790 wgd