AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00478 ATGTCAACAACAACACCAACAAAGAACACAACACCAATCTCAAACAACATGAGAAAACACATACACAAGATTAAACAAACCCTAGCCCCATTATCAAACAACAACTATTACACCGATGACGTCATTCACACCACGTTGAAAGAATGTAACATGGACTATAAGGAGACGTGTACAAGGTTGAAGATGATTCATGACGTCAGAGAGATTGCTGGTAAACACAGTGTTGATGACGTCATCGTCATGTTGAAAGAGTGTAATCTTGATCCTAATGAAGCTGCTCAAAGGCTACTGTATATTGATACTTTTCACGAGGTTAAAAAGAAAAATGACAGGCGGAAATCTACTAGCAGCGATGAATTCGAAGAGTATGGACGGGGACGGGGTTATCAGTGGCGGGGACCTAGGAATGGTGGGCGAGGGAATTTCTACCCATCAAAATTTTATAATGATGCTGGAGGTGGGAGAAATATGAACTCAGGAAAGGAATATGTTGTTACTAATCACGTAGATAAGGTTTCGAGGCAGACATTGCCGGTTGATTCTGGAAAACAAAACGGACACATGGCAACATCTGCTGCCAAGATCAATGGCACACTGGCTATATCCAATGGGAGTCACAGTCCAAAGCTTGCACCCAAAGTACCTTCATATTCTGAAGCGGTTTCATATCAGAACACCAAGTACACTTGCTCCGTGGGTACCATAAAATGTGAAATTGTAAAACGTGAGAGCTGTAGCAGACTGAATGGTAGTACTCCAGGTAGCAAGAAGTTTAGTGCTGATCAAGCAGGTGCTGGGACTAGTCCAGTCATTGCAGAAGCTGCATCTGATGTAGTTGTAGAGAAACAGATTCCTGAATCATTGTTGTCAACCCAGAACAGCTCACATGTTGTCAGTCCCACTCAGGAAAACCAGCCTGCAAAAGCGATTGTCTCTGAGCACACGACTGCGCCCATCATCGATACTCATCCGACTTCTGAAGAAGATTCTGAGTTGAAACTGTCATCTCCAAAGCTTGATCTGATGCAAGAAAAGTTGACTGTATCATCTCGTCAACCTGTTATTTTCCCTGATCATCTCCAAGTTCCTGAAAATTATAAAAATCAGTTCGTATTTGGAAGTTTGGATGCTACTACTGATGATTCCGGACCTATATCCGTGATTGAATCTACTCATCAAAATGGTACTACTGATGATTCTGGACCTATAACCATGATTGAATCTACTCATCAAAATGGTGACGTTGTCACAGAACCTTCTTTGAGCGACCAAAATGTTCCTACAGCAGCTCAGGAAGTCGAACATGAAGATCATCCGCTACCAAATCTTTCTGAGCATGTTTTGCCTTCACCAGAGAGCATCTCATCTGATTCTGCTTTAAAGCACGAGCAAACAGAGCAGGAGATGGTTCCCCCTATAGGAGGATTTCAAAATTTAGTTTTTCCAACTACCAGGGACTACAGTTATGGATTTATTCCACATCCGATGAGTCCACATTTTGTACAACTTGATGTACCTGAGCTCCAGAGTGTGAGCTCTCAAGATGCATGTACATTGGCCCCCACTTCCGCTGCACAACCTGCAATGGCAGGCCAGACCTCTATGGCAATGTCTCCACCTCAATTTCCTTATTACAGACAACCATACCCAGCCTACTTTTCGTATAATCCATATTTCCATCCTATGTATTTTGCACCTAATGCACAGCTGTTGAATCATGGTGTATTCCCTCAGCAACCACCTCCTGTCAATGTACATATGCAACCGGGGGTGAAGTTACCTGCTCCTCCTTCCCAGTACAAACAGGAAAGTAATGAAGATCTTAATGCATCTCAAGTGAACGATACCAATGTTCATTCCACTGCTCAACAGGGCGAAGGTCTACAAGTTAGGGCTCCTGCAGCTGGAGTAGAAGTAGTGCCCACTTTACCACCCCATTATTTCTACAACTTCCCTCAAGCCCAACACATAGCTTTCTCACATTTACAAACTGGCCTCTACCATTCTTCTCAAACAATGACTTCTCAACCAACTATACAGCCCCCACTCGTGTACCAATTTCAACCCGCTAGTGGGACCATTGAACCTGTAATACAACCACCCAGTTCTTATCAACAGAGTCAGCCCGCGTTACTGAATAGAGAGACCAATTGA 2154 43.36 MSTTTPTKNTTPISNNMRKHIHKIKQTLAPLSNNNYYTDDVIHTTLKECNMDYKETCTRLKMIHDVREIAGKHSVDDVIVMLKECNLDPNEAAQRLLYIDTFHEVKKKNDRRKSTSSDEFEEYGRGRGYQWRGPRNGGRGNFYPSKFYNDAGGGRNMNSGKEYVVTNHVDKVSRQTLPVDSGKQNGHMATSAAKINGTLAISNGSHSPKLAPKVPSYSEAVSYQNTKYTCSVGTIKCEIVKRESCSRLNGSTPGSKKFSADQAGAGTSPVIAEAASDVVVEKQIPESLLSTQNSSHVVSPTQENQPAKAIVSEHTTAPIIDTHPTSEEDSELKLSSPKLDLMQEKLTVSSRQPVIFPDHLQVPENYKNQFVFGSLDATTDDSGPISVIESTHQNGTTDDSGPITMIESTHQNGDVVTEPSLSDQNVPTAAQEVEHEDHPLPNLSEHVLPSPESISSDSALKHEQTEQEMVPPIGGFQNLVFPTTRDYSYGFIPHPMSPHFVQLDVPELQSVSSQDACTLAPTSAAQPAMAGQTSMAMSPPQFPYYRQPYPAYFSYNPYFHPMYFAPNAQLLNHGVFPQQPPPVNVHMQPGVKLPAPPSQYKQESNEDLNASQVNDTNVHSTAQQGEGLQVRAPAAGVEVVPTLPPHYFYNFPQAQHIAFSHLQTGLYHSSQTMTSQPTIQPPLVYQFQPASGTIEPVIQPPSSYQQSQPALLNRETN 717
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00478 717 PANTHER FLOCCULATION PROTEIN (DUF1296) 603 717 IPR044277 GO:0051082(PANTHER)
Cind3g00478 717 Pfam GBF-interacting protein 1 N-terminal 61 113 IPR009719 -
Cind3g00478 717 SUPERFAMILY UBA-like 61 116 IPR009060 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00478 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:299322210 Cind5g03190 Cind-Chr5:70357160 dispersed
Cind Cind-Chr3:299322210 Cind3g02778 Cind-Chr3:341515916 transposed