AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00479 ATGTCTAACGGCAATGACAGCAGATACTCAATCTCACAAAACGCTTACATCAAGCTCATCCTTCACGCTCTAAAACACAAAACCAGCGCCGTTAACGGCGTCTTGATCGGCCGGTTATCCGGCGATGTAGTCGAAATCACTGATTCAGTCCCGTTGTTTCATACTTCTCAGATCGGGTTGTTGCCGTCGCTTGAGATCGCTTTAATTATGATTGAAGAGTATTATAGTGGACAAGGATTGAGTATTGTTGGATATTTTCATGCTAATGAGAGGTGTGATGATGTGGAGCTTGGTGGTGTGGCCAAGAATATTGCGGATCATGTTTATCGTTATTTTCCGCAAGCTGCCGTGCTCTTGCTAGATAACAAAAAGCTTGGAGCATTGCGAAACAAGAAGGATGCAGCTCCTGTAGTGCAGCTGTATACACGCGACTCCTCTAAGAATTGGAAGCAAATTGAGTCAGAAGGAACCAAGCGGATTACCACCAAGGAACCTTCTGCCAATGTTGTCCTATTGGATTTTATTTCATCTGAGAAATGGAACGATATTGTGGACTTCGATGACCACCTTGATGACATTAGCAAGGATTGGTTGAACTCCGAACTCTTCAAGTAA 615 43.74 MSNGNDSRYSISQNAYIKLILHALKHKTSAVNGVLIGRLSGDVVEITDSVPLFHTSQIGLLPSLEIALIMIEEYYSGQGLSIVGYFHANERCDDVELGGVAKNIADHVYRYFPQAAVLLLDNKKLGALRNKKDAAPVVQLYTRDSSKNWKQIESEGTKRITTKEPSANVVLLDFISSEKWNDIVDFDDHLDDISKDWLNSELFK 204
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00479 204 PANTHER ER MEMBRANE PROTEIN COMPLEX 8 202 IPR005366 GO:0072546(InterPro)|GO:0072546(PANTHER)
Cind3g00479 204 Pfam Uncharacterised protein family (UPF0172) 9 202 IPR005366 GO:0072546(InterPro)
Cind3g00479 204 CDD MPN-UPF0172 11 199 IPR005366 GO:0072546(InterPro)
Cind3g00479 204 Gene3D Cytidine Deaminase, domain 2 4 90 - -
Cind3g00479 204 ProSiteProfiles MPN domain profile. 9 139 IPR037518 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00479 K23569 ER membrane protein complex subunit 8/9