AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00492 ATGCTTCATTTACCTTCAATTCAAATATCTTGTTTATCAGACAACAAGTACAAAGATTCTTCAACCAAAACATTGAAATTTAGAGAATCAAATTCAAGAACCACCACAACTTACAAAAAAGGTTATTTGAACAAAGAGAGCAAACCCCAGAATGTGAATCTTGAAATTTCACCTCATAGAGCTGTGTCTGCAGTAAGATTAATGCGGATAGAGTTTGGTGGTGCCTTTGCTGATCTCTTAAACGAGAAAGGGAAGGGATCAGGTGATAACGAGATGGGATATGTTGAAAGAACGCTTGGTTTTTGCACTCGAGATTTGGATGATAGAGATCTCAGAGTGGTAACAGATATTGTTGGAGGTACGATACGGTGGAGAAAATATCTTGACTATTTGATATTGTCCTTGTGCCATGATCCAAACGTGTTTAGTCGTATGGAGCCTCTACTGTTACAGATTCTTCGGATTGGATTCTATGAGATTGTAAAGCTTGAGAACCCTTCATATGCTGTTATAAATGAGAATGTGCAGCTTGCAAAGATTGCACTTAGGCCAGGTGCTGGTAACATGGTCAATGGTATTCTGAGGAAGCTTGTTTCGCTAAAGGAAAGTAACTCTCTTCCTTCACCTCAAGTGGAGGGTGATGATCGTGCACAAGCACGTGCTCTTGCTACTCTTCATTCTCATCCAGTTTGGATGGTGAGGCGCTGGATAAAATATCTCGGACGTGAAGAAGCTGTTAAGCTGATGATGTGGAATAACAGTGATCCCCGTTTTAGTCTAAGGGCTAATAGAGGAAAAGGTTTTACACGTTCAGAGCTTGTGTCACGACTGGAAACATTAGAGGTACCTTATGAGTTATCACCTCACCTCGATGATTTTGTTCGTATCAGCACTGGAATGCAGAGTGTTATACAAGATGGACTATTAAAGGAAGGTTTATGTTCTGTCCAAGACGAGAGTGCAGGTTTGGTGGTTTCCATTGTTGACCCACAACCTGGAGAGACAATACTTGACTGTTGTGCTGCTCCTGGAGGAAAGACTCTTTTCATGGCAGCTTGTTTGAATGGTGAAGGCATGGTAACTGCAATCGACATAAACAAAGGGCGCTTGAGGATCCTTAAAGAGACGGCCAAACTGCAGCAACTTAATAATGTCGTCACAACTGTTCATGCCGATCTTCGTACATTTCATGAGAGTAATAGTATTACCTATGATAAAGTGTTGTTGGACGCTCCTTGTTCCGGACTTGGTGTTCTTTCCAAGAGAGCAGATCTACGGTGGAATAGGAAGTCTGAAGATATGGAAGAACTTAAAAGTTTGCAAGATGAACTTCTTGATGCCGCTTCCATGCTGGTAAAACCTGGTGGAGTGCTAGTATACAGCACCTGTTCAATTGACCCTGAAGAGAATGAAGAGAGAGTGGCTGCGTTTCTTCTCAGGCATCAGGAATACAGCATAGATTCTGCAGAGAGATACATATCGCCTGAATTTCTGACACAGCATGGTTATTATTTCTCTAGCCCTGTGAGAAATTCTCTAGACGGTGCCTTTGCAGCAAGACTCATTCGTTGCTCTTGA 1578 41.89 MLHLPSIQISCLSDNKYKDSSTKTLKFRESNSRTTTTYKKGYLNKESKPQNVNLEISPHRAVSAVRLMRIEFGGAFADLLNEKGKGSGDNEMGYVERTLGFCTRDLDDRDLRVVTDIVGGTIRWRKYLDYLILSLCHDPNVFSRMEPLLLQILRIGFYEIVKLENPSYAVINENVQLAKIALRPGAGNMVNGILRKLVSLKESNSLPSPQVEGDDRAQARALATLHSHPVWMVRRWIKYLGREEAVKLMMWNNSDPRFSLRANRGKGFTRSELVSRLETLEVPYELSPHLDDFVRISTGMQSVIQDGLLKEGLCSVQDESAGLVVSIVDPQPGETILDCCAAPGGKTLFMAACLNGEGMVTAIDINKGRLRILKETAKLQQLNNVVTTVHADLRTFHESNSITYDKVLLDAPCSGLGVLSKRADLRWNRKSEDMEELKSLQDELLDAASMLVKPGGVLVYSTCSIDPEENEERVAAFLLRHQEYSIDSAERYISPEFLTQHGYYFSSPVRNSLDGAFAARLIRCS 525
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00492 525 Gene3D - 62 209 IPR035926 -
Cind3g00492 525 Pfam NusB family 95 197 IPR006027 GO:0003723(InterPro)|GO:0006355(InterPro)
Cind3g00492 525 PRINTS Viridiplantae FMU-related RCMT signature 205 218 IPR023268 -
Cind3g00492 525 PRINTS Viridiplantae FMU-related RCMT signature 89 105 IPR023268 -
Cind3g00492 525 PRINTS Viridiplantae FMU-related RCMT signature 65 88 IPR023268 -
Cind3g00492 525 PRINTS Viridiplantae FMU-related RCMT signature 482 494 IPR023268 -
Cind3g00492 525 PRINTS RNA (C5-cytosine) methyltransferase signature 308 322 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cind3g00492 525 PRINTS RNA (C5-cytosine) methyltransferase signature 506 523 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cind3g00492 525 PRINTS RNA (C5-cytosine) methyltransferase signature 405 417 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cind3g00492 525 PRINTS RNA (C5-cytosine) methyltransferase signature 455 471 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cind3g00492 525 PRINTS RNA (C5-cytosine) methyltransferase signature 337 347 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cind3g00492 525 Gene3D Vaccinia Virus protein VP39 322 525 IPR029063 -
Cind3g00492 525 Pfam 16S rRNA methyltransferase RsmB-F 327 521 IPR049560 -
Cind3g00492 525 Gene3D Sun protein; domain 3 216 321 - -
Cind3g00492 525 Pfam Methyltr-RsmF-B-like, ferredoxin-like domain 228 299 IPR054728 -
Cind3g00492 525 FunFam Ribosomal RNA small subunit methyltransferase B 320 524 - -
Cind3g00492 525 FunFam 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 215 319 - -
Cind3g00492 525 CDD AdoMet-MTases 335 461 - -
Cind3g00492 525 FunFam Ribosomal RNA small subunit methyltransferase B 57 207 - -
Cind3g00492 525 NCBIfam 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 104 523 IPR004573 GO:0006364(InterPro)|GO:0008649(InterPro)
Cind3g00492 525 ProSiteProfiles SAM-dependent MTase RsmB-NOP-type domain profile. 248 524 IPR001678 GO:0008168(InterPro)
Cind3g00492 525 SUPERFAMILY NusB-like 95 232 IPR035926 -
Cind3g00492 525 PANTHER NOP2 YEAST -RELATED NOL1-NOP2-FMU SUN DOMAIN-CONTAINING 107 522 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Cind3g00492 525 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 220 523 IPR029063 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00492 K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
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Event-related genes

Select Gene_1 Gene_2 Event_name
67556 Cind1g07628 Cind3g00492
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr1:279904889 Cind3g00492 Cind-Chr3:298789749 dispersed
Cind Cind-Chr2:251122601 Cind3g00492 Cind-Chr3:298789749 dispersed
Cind Cind-Chr3:298789749 Cind4g02331 Cind-Chr4:2006236 dispersed