AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00499 ATGGCTGCTCAAGCTGTGGAAGGTGCAGCAGTTACAGCTCTCCGATCAGTTTTCCACCGTGTCCGACATGCAGCTGAGAGATCTGGTCGACATGCTGACGATGTACGTGTGATAGCAGTAAGCAAGACAAAACCTGTCTCTCTTATCCGACAAGTGTACGAGGCTGGACATCGTTGTTTCGGAGAAAACTATGTTCAAGAGTTCATCGAAAAAGCTCCTCAGCTTCCAGAGGATATTGAGTGGCACTTTATTGGACATTTACAGAGCAACAAAGCAAAATCACTACTTGCTGCTGTCCCGAATCTGTCTATGGTACATGGTGTAGATAACCAGAAGATAGCAAATCACCTTGATCGTGCAGTTTCAAGCATAGGAAGAAAGCCTTTGGCAGTTATGGTCCAAGTAAATACCAGTGGGGAGATATCAAAATCTGGGATTGAACCAGCAAACTGTGTAGAGCTTGTAAAGCATGTTAAGTCCAGCTGCCCAAACCTCGTGTTTTCTGGTTTGATGACAATTGGAATGCCAGACTACACATCCACTCCTGAGAACTTTAGGACTCTATCGAGGTGCAGAGGGGAGATCTGCAAGGAACTCGGGATGGCTGAAAACCAGTGTGAACTATCAATGGGCATGTCTGGCGACTTTGAACTAGCGATTGAAATGGGCAGCACAAACGTGCGGATTGGATCAACCATTTTTGGACCAAGGGATTATTCCAAGAAACAGCAGCAGCAGTAA 741 45.88 MAAQAVEGAAVTALRSVFHRVRHAAERSGRHADDVRVIAVSKTKPVSLIRQVYEAGHRCFGENYVQEFIEKAPQLPEDIEWHFIGHLQSNKAKSLLAAVPNLSMVHGVDNQKIANHLDRAVSSIGRKPLAVMVQVNTSGEISKSGIEPANCVELVKHVKSSCPNLVFSGLMTIGMPDYTSTPENFRTLSRCRGEICKELGMAENQCELSMGMSGDFELAIEMGSTNVRIGSTIFGPRDYSKKQQQQ 246
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00499 246 Hamap Pyridoxal phosphate homeostasis protein. 12 236 IPR011078 GO:0030170(InterPro)
Cind3g00499 246 PANTHER PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN 4 243 IPR011078 GO:0005622(PANTHER)|GO:0030170(PANTHER)|GO:0030170(InterPro)
Cind3g00499 246 SUPERFAMILY PLP-binding barrel 11 235 IPR029066 -
Cind3g00499 246 NCBIfam YggS family pyridoxal phosphate-dependent enzyme 17 237 IPR011078 GO:0030170(InterPro)
Cind3g00499 246 ProSitePatterns Uncharacterized protein family UPF0001 signature. 81 95 IPR011078 GO:0030170(InterPro)
Cind3g00499 246 CDD PLPDE-III-YBL036c-euk 14 235 - -
Cind3g00499 246 FunFam Pyridoxal phosphate homeostasis protein 2 244 - -
Cind3g00499 246 PIRSF YBL036c-PLPDEIII 1 243 IPR011078 GO:0030170(InterPro)
Cind3g00499 246 Pfam Alanine racemase, N-terminal domain 21 237 IPR001608 -
Cind3g00499 246 Gene3D Alanine racemase 2 246 IPR029066 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00499 K06997 PLP dependent protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:298520741 Cind5g03282 Cind-Chr5:153807476 dispersed