AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00503 ATGTCAAAGAGGCAAAAAACAACTGTCCGCCGAACACAATCCAACAACAAGATCATCCACACGTATGGGGCCGACAACATGACATCAAATATTCAATGTACGATGAATATACAAGATTCTGTTGCAGCTGTAGAATCTATTTTAAGGTACAGGTTTTTGGACAAAAGTTTGTTAGAAGAAGCTTTGACACATTCTTCATACACGGAGAGTCAGTCGTATCAAAGGTTGGAGTTTCTTGGTGATGCTGCTCTTGGGAATGCGATATCGAGTTTTGTTTATTTGGCTTACCCTGATCTTGACCCTGGCCAATTGTCGCTTCTTCGTGCTGCGAATATTAGTACCGAGAAACTTGCGAGAGTGGCTGTGCAACATGGGTTGTATATGTATGTCAGGCATAATGCAGCAGATATGCTTAGTGATAAGGTTAGAGAATTTGTGGATGTTGTTGAGGGAGAACAAGAGATAGTTGTGCACGGTGGACAAATAAAAGCCCCAAAAGTTTTAGCGGATATTGTAGAATCAGTGGCTGCAGCTGTTTATGTTGATTGTGGGTTCAATTTGCAAAGTATGTGGCTGGTAATCAGAGAGTTACTTGAACCAATAGTAATGCTAAATGTCCTCGAGAAAAAACCACAGCCTATTACAATGCTGTTTGAGTTATGTCAGAAAGATGGGAAGCATCTTGAAATAAAGCATTGCAGGAAAGTGATTAAATCTCTAGGTGATAGAAACATTGCAAGCGTTTTTGTGGATGGGATATTTATTGCCTCTGGCTCTTCAGAGACCAAAGAGAATGCAAAGCTTCATGCAGCCGAAGCCGCTTTGTCTAAGTTAACAAGGTCCAATAACATCAGCGCAATAGTCCCGTATGTAATTGGTGGTTTAAATGAAGCAACTGAAATTGAAGGTGCCAAACAGAAATTACACGAGCTTTGCAACAAGAAACGATGGCCAAAAGCCACTTACAAAATTAAGAATGAGCTGGGACCCGCCCATGATAGAAGATACGCATCATCAGTTGAAATTGATGTTTCCAATAGGGTTTTTATAGTGACGGGAGAAATGAGGTCTAGAGTAAAGGATGCTGAGAATTCTGCAGCCTCGGTGATGTTCTGTGCTTTGCAAAAATATGGATTGATATGA 1143 40.68 MSKRQKTTVRRTQSNNKIIHTYGADNMTSNIQCTMNIQDSVAAVESILRYRFLDKSLLEEALTHSSYTESQSYQRLEFLGDAALGNAISSFVYLAYPDLDPGQLSLLRAANISTEKLARVAVQHGLYMYVRHNAADMLSDKVREFVDVVEGEQEIVVHGGQIKAPKVLADIVESVAAAVYVDCGFNLQSMWLVIRELLEPIVMLNVLEKKPQPITMLFELCQKDGKHLEIKHCRKVIKSLGDRNIASVFVDGIFIASGSSETKENAKLHAAEAALSKLTRSNNISAIVPYVIGGLNEATEIEGAKQKLHELCNKKRWPKATYKIKNELGPAHDRRYASSVEIDVSNRVFIVTGEMRSRVKDAENSAASVMFCALQKYGLI 380
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00503 380 Pfam Ribonuclease III domain 74 184 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cind3g00503 380 SMART DRBM-3 304 375 IPR014720 -
Cind3g00503 380 SMART DRBM-3 213 279 IPR014720 -
Cind3g00503 380 Pfam Double-stranded RNA binding motif 213 278 IPR014720 -
Cind3g00503 380 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 303 376 IPR014720 -
Cind3g00503 380 Gene3D - 208 286 - -
Cind3g00503 380 CDD RIBOc 56 202 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cind3g00503 380 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 303 375 - -
Cind3g00503 380 SUPERFAMILY RNase III domain-like 39 201 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cind3g00503 380 Gene3D - 301 376 - -
Cind3g00503 380 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 212 280 IPR014720 -
Cind3g00503 380 Gene3D Ribonuclease III domain 29 205 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cind3g00503 380 SMART riboneu5 56 207 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cind3g00503 380 FunFam Endoribonuclease dicer-like 1 35 205 - -
Cind3g00503 380 ProSiteProfiles Ribonuclease III family domain profile. 41 184 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cind3g00503 380 PANTHER DICER-RELATED 35 352 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Cind3g00503 380 SUPERFAMILY dsRNA-binding domain-like 303 378 - -
Cind3g00503 380 ProSitePatterns Ribonuclease III family signature. 74 82 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cind3g00503 380 SUPERFAMILY dsRNA-binding domain-like 166 281 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00503 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:298091629 Cind5g02487 Cind-Chr5:148879367 dispersed
Cind Cind-Chr3:298091629 Cind3g02414 Cind-Chr3:350268930 transposed