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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00506 ATGTCGTCGTCTATGTTTTCTGCAACTGCTCCCCATGGTACCGCACTAGGTTTTGAACAAAGCAAGGTCTTTGGCGATTTCAGCAAGTCAGATGCGGTGCATAAGAATCTTCTGCATTTCAAGAGGAACCATGTATCAGCTAAGCTGACAAACGTGAGGGTGCTATCAAAGGAGAGAATCGAGTGTAGCACAACAAAGGTGGAGAGTAACCTTAAGTTTTTGAAAGGAGAAAAGTTTCAACTTGATGATGTAATCGAAGCGCAGCAATTTGATAGAGATATTCTTAGTGCTATATTTGAAGTGGCACGTGAAATGGAAACAATTGAGAAGAATTCACGTGGAAGCCAGCTTTTGAATGGTTTTCTAATGTCTACTCTATTTTACGAGCCCTCGACTAGGACTAGGCTTTCCTTTGAGTCAGCAATGAAGCGGTTGGGTGGTGAAGTTTTGACTACTGAAAATGCGCGCGAGTTTTCTTCAGCTGCCAAAGGAGAGACACTCGAAGATACGATTAGAACTGTTGAAGGGTATTCAGACATAATTGTCATGAGGCACTTTGAAGGCGGTGCTGCTAGAAGAGCTGCCATGACTGCTAACATTCCAGTTATTAATGCTGGTGACGGTCCAGGTCAGCACCCTACTCAGGTATCCAATCATTTTCTCTCTTATGAAGAGATAGGAAAGCTGGATGGAATTAAAGTAGGACTTGTTGGTGATCTTGCTAATGGGCGAACAGTTCGCTCACTTGCATATCTTCTTGCCAAATATAATAATGTGAAGATCTACTTTGTCTCACCCGAGGTTGTGAAGATGAAGGAGGACATCAAAGAATACTTAACGTTAAAGGGAGTTGACTGGGAAGAAAGTGCTGATCTAATGGAAGTGGCATCAAAGTGTGATGTGGTGTACCAAACCCGCATCCAGAAAGAACGTTTTGGTGAAAGAACAGATCTCTATGATGCAGCTCGTGGAAAGTATATTGTTGATCAGGATGTGTTGAATGTCATGCAGAAGCATGCTGTTGTTATGCATCCTCTCCCAAGGCTTGATGAGATAACAGTGGATGTAGATGATGATCCAAGGGCTGCGTATTTTAGACAAGCGAAAAATGGACTTTACATTAGGATGGCTTTGTTGAAGCTCTTACTTCTTGGTTGGTGA 1161 42.55 MSSSMFSATAPHGTALGFEQSKVFGDFSKSDAVHKNLLHFKRNHVSAKLTNVRVLSKERIECSTTKVESNLKFLKGEKFQLDDVIEAQQFDRDILSAIFEVAREMETIEKNSRGSQLLNGFLMSTLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFEGGAARRAAMTANIPVINAGDGPGQHPTQVSNHFLSYEEIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYNNVKIYFVSPEVVKMKEDIKEYLTLKGVDWEESADLMEVASKCDVVYQTRIQKERFGERTDLYDAARGKYIVDQDVLNVMQKHAVVMHPLPRLDEITVDVDDDPRAAYFRQAKNGLYIRMALLKLLLLGW 386
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00506 386 Pfam Aspartate-ornithine carbamoyltransferase, carbamoyl-P binding domain 83 220 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Cind3g00506 386 PRINTS Aspartate carbamoyltransferase signature 211 228 - -
Cind3g00506 386 PRINTS Aspartate carbamoyltransferase signature 157 166 - -
Cind3g00506 386 PRINTS Aspartate carbamoyltransferase signature 302 311 - -
Cind3g00506 386 PRINTS Aspartate carbamoyltransferase signature 342 347 - -
Cind3g00506 386 PRINTS Aspartate carbamoyltransferase signature 364 378 - -
Cind3g00506 386 PRINTS Aspartate carbamoyltransferase signature 117 139 - -
Cind3g00506 386 Hamap Aspartate carbamoyltransferase [pyrB]. 81 385 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Cind3g00506 386 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 127 134 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cind3g00506 386 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 76 383 - -
Cind3g00506 386 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 338 347 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cind3g00506 386 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 127 146 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cind3g00506 386 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 212 223 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cind3g00506 386 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 348 371 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cind3g00506 386 SUPERFAMILY Aspartate-ornithine carbamoyltransferase 79 383 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cind3g00506 386 Pfam Aspartate-ornithine carbamoyltransferase, Asp-Orn binding domain 230 381 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cind3g00506 386 FunFam Aspartate carbamoyltransferase 2 214 370 - -
Cind3g00506 386 FunFam Aspartate carbamoyltransferase 83 213 - -
Cind3g00506 386 Gene3D Aspartate-ornithine carbamoyltransferase 84 379 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cind3g00506 386 Gene3D Aspartate-ornithine carbamoyltransferase 212 370 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Cind3g00506 386 NCBIfam aspartate carbamoyltransferase 83 383 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00506 K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
67642 Cind2g01481 Cind3g00506
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:297778318 Cind4g04456 Cind-Chr4:324304410 dispersed
Cind Cind-Chr2:273131212 Cind3g00506 Cind-Chr3:297778318 transposed
Cind Cind-Chr4:93499108 Cind3g00506 Cind-Chr3:297778318 transposed
Cind Cind-Chr6:227347168 Cind3g00506 Cind-Chr3:297778318 transposed
Cind Cind-Chr8:208949108 Cind3g00506 Cind-Chr3:297778318 transposed
Cind Cind-Chr9:154735903 Cind3g00506 Cind-Chr3:297778318 transposed
Cind Cind-Chr2:343271257 Cind3g00506 Cind-Chr3:297778318 wgd