AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00509 ATGGATGCCGAAAGAGCATCTCTTCTAGCAAAACGAAGAGATATCACTCGCACGAAATCTAGTGCTCACGATGAGTTACACAGTTTCAGGTTTTTGTTTTTTGATAAGCTTTGTAACGAAAGTGAGACTGTTCGCAGAGGTTATACGCAGCAACTCAATAGCTCGCTTAAAATAGTCTTCATATTCGTTGCCCCATGTTTTACCGCTGAGGCTGCATATAAGATCTGGTGGTATAGTTCAGGAGCCACTACTATTCCATACTTGGGCAACACCATTGTGATTAACATCCTTGCATGCTCTTTAGAGCTCTGTTCATGGCTCTATAGAACCTTAGTGTTTTTCCTAGTTTGTGTCCTGTTCCGTCTTATTTGTCATCTACAAATCCTCCGTCTACAAGATTTCGCTCAGGTGTTCCATGTAGACTCTGATGTTGAGTATGTAATGAGGGAACATCTAAGGATTAGGAGGCATCTTCGTATCATAAGTCATAGATACCGTATCTTTATAATGTGGGCGCTCATTCTTGTCACAATCAGTCAATTTGCAGCGCTTCTTGACACTACACGGTCTAAAGCAGATCTTAGCATCTTCAAAACTGGCGAACTTGCAATTATTTCTGTAAGCTTACTTGCTGGACTAATGATACTACTAAGGAGTGCCACCAGGATCACCCATAAGGCTCTAGGCGTGACGTGCCTGGCTACTAAGTGGCATGTGTGTGCAACCATCGACTCCTTTGATACACCTGAACTAGAAACAGAAACCCCGCCTACCACTGCTATGGGAAACCAAGTTTTCCCTCATGATGCATCATCTGATAATGAGGATGTTGGTAGTGAAGACGAGTTAGATAACACTAAACTAATACCTGCTTATGCTTCAAGTACCATCTCATTCCAGAAAAGGCAAGCCTTAGTGACGTATTTTGAGAACAACAGAGCGGGGATAACAGTTTTTGGATTTATGCTAGATAGGACTACATTGCACACTATAGTGATGATAGAGATGTCACTCGTGTTGTGGTTGCTTGGAAAGACTGTCGATCCGAACACAACAGGAAACCCAAACATTGTACAACCCCAACTGTAA 1089 42.33 MDAERASLLAKRRDITRTKSSAHDELHSFRFLFFDKLCNESETVRRGYTQQLNSSLKIVFIFVAPCFTAEAAYKIWWYSSGATTIPYLGNTIVINILACSLELCSWLYRTLVFFLVCVLFRLICHLQILRLQDFAQVFHVDSDVEYVMREHLRIRRHLRIISHRYRIFIMWALILVTISQFAALLDTTRSKADLSIFKTGELAIISVSLLAGLMILLRSATRITHKALGVTCLATKWHVCATIDSFDTPELETETPPTTAMGNQVFPHDASSDNEDVGSEDELDNTKLIPAYASSTISFQKRQALVTYFENNRAGITVFGFMLDRTTLHTIVMIEMSLVLWLLGKTVDPNTTGNPNIVQPQL 362
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00509 362 Pfam Protein of unknown function (DUF3537) 30 334 IPR021924 -
Cind3g00509 362 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 30 347 IPR021924 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00509 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
67510 Cind1g06378 Cind3g00509
67511 Cind1g06379 Cind3g00509
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr1:378517426 Cind3g00509 Cind-Chr3:297469675 dispersed
Cind Cind-Chr3:297469675 Cind3g01556 Cind-Chr3:1873133 dispersed
Cind Cind-Chr3:297469675 Cind1g06378 Cind-Chr1:378512899 transposed