AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00544 ATGAAGACTAAGAGCAATCAGGTAACCAAGAGCAAGCCAGAAATACAAACCCAAGCTTCACAGGAGTCCCCAAGTGACCAACATAACGATGCTACAGAGGCTCCTGTTCCTGACACTGGTTCAGCCTCCATTTCGAGCAATGACAACAGAAAAGTTTCTCGAGAGGATATTGAACTTGTCCAGAACTTGATAGAACGCTGTTTGCAGCTGTATATGAACAAAGACGAGGTTGTGAAAACCTTACTAAATCGTGCAAGGATAGATCCTGGATTTACAGCTTTAGTGTGGCAGAAATTGGAAGAAGAGAATGCAGACTTTTTTAGAGCCTACTACATAAGGCTGAAACTGAAGAAGCAGATCATCCTGTTTAATCATTTGCTTGAACATCAGTACCATCTTACCAAGCATCCAGTGCATCCAAGGCTTCCTCTTGCTCCTATACAAAATGGCATCCATCCTATGCCAGTTAACAACTTACCAATGGGGTACCCTGTTCTACCACAACCTTCAATGGCAACTACTGGCCAACCTCATATGAATGCCATTGGTATGTCCAATTGTCATGTAGTCAATGGAGTGCCTGCTTCAAGTAACTTCCATCCAATGCGGATGAACTCTGGAAATGGAAGTATGGGGATGGATAGTAGTGCAACTGATGCCACACCAGCTATTCCAGGGAATGGGGCAATATCACCCATGTCAGATATGCCTATGAGCCCTACATCAGCATCCAGTGGTCATTTCCCGTTTACTACATCTGAAATATCGGGAATGGGAGTAGACACATCAGCTCTTGATACAGCTTTTACGTCTGACGTGGCAAGTTCTGTAGACTTGCATCTGCAACCTGATAATGGAACTTCTAGAGCTTTTGGTCATATCCCTTGGAATTTCAGCCTTTCAGATCTTACAGCAGATTTGTCAAATTTGGGAGATCTCGGAGCTCTTGGAAACTATCCTGGCTCCCCCTTTCTGCCATCTGATTCAGATTTATTACTTGATTCCCCGGAACAAGAGGACATTGTGGAAGATTTCTTTGCTGACTCTGTACCTGGACCACCGTGCTCCAATTCAGATGAGGAGAAGTCTTAG 1092 44.14 MKTKSNQVTKSKPEIQTQASQESPSDQHNDATEAPVPDTGSASISSNDNRKVSREDIELVQNLIERCLQLYMNKDEVVKTLLNRARIDPGFTALVWQKLEEENADFFRAYYIRLKLKKQIILFNHLLEHQYHLTKHPVHPRLPLAPIQNGIHPMPVNNLPMGYPVLPQPSMATTGQPHMNAIGMSNCHVVNGVPASSNFHPMRMNSGNGSMGMDSSATDATPAIPGNGAISPMSDMPMSPTSASSGHFPFTTSEISGMGVDTSALDTAFTSDVASSVDLHLQPDNGTSRAFGHIPWNFSLSDLTADLSNLGDLGALGNYPGSPFLPSDSDLLLDSPEQEDIVEDFFADSVPGPPCSNSDEEKS 363
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00544 363 NCBIfam TIGR01589 domain 57 113 IPR006476 -
Cind3g00544 363 Pfam Plant protein 1589 of unknown function (A-thal-3526) 60 111 IPR006476 -
Cind3g00544 363 PANTHER OS02G0137100 PROTEIN 54 327 IPR006476 -
Cind3g00544 363 MobiDBLite consensus disorder prediction 1 51 - -
Cind3g00544 363 MobiDBLite consensus disorder prediction 1 48 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00544 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:294212316 Cind3g03096 Cind-Chr3:98914222 dispersed
Cind Cind-Chr2:16257141 Cind3g00544 Cind-Chr3:294212316 transposed
Cind Cind-Chr8:146972088 Cind3g00544 Cind-Chr3:294212316 transposed
Cind Cind-Chr2:346328505 Cind3g00544 Cind-Chr3:294212316 wgd