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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00563 ATGTCTCGTTATTTCCTTTTGTTCATATCTCTTCTCCTGGTCCTCATCATCTCCGCCTCAGCTCATGGAGGCGATGATGATGAGGACGAAGAAGCTGGTCCAAAGCCCAACCTACGATCAAAATCTTTGATCCTGGTCAAGATATGGTGTTTAATACTAGTGTTCGTTGGAACATTTGTTGGTGGTGTGTCTCCATACTTTTTTAAATGGAACGAGGGGTTTTTGGTGTTGGGGACACAGTTTGCGGGTGGTGTGTTTCTTGGTACTGCTTTGATGCATTTCTTAAGTGATGCTAATGAAACGTTTCAAGATTTGACTAGTGTTGAATACCCTTTTGCGTTTATGTTAGCTTGTGGTGGTTATCTGCTTACTATGTCTGCGGATTGTGTCATTTCGTATGTTTATGGGAAGCAAAATGGTTCGGATGTTGAAGATCAAGAGGACAGCAGGAACGGAAAAGATGAAAATGCCCCTGCAAAGATTGGAATAACATCAGCATCTTCACTCGGGGACAGCATTTTGCTGATAGTTGCATTATGTTTCCATTCGGTCTTTGAAGGAATAGCAATTGGTATCTCAGACACGAAAGCAGACGCTTGGAAAGCGTTATGGACAATATCTCTTCACAAAATCTTTGCAGCCATTGCAATGGGAATTGCTCTACTAAGGATGATTCCTGACCGTCCTTTATTATCGTGTGCATCTTACGCCTTTGCTTTTGCAATATCAAGTCCTATAGGGGTTGCAATTGGAATAGTGATAGATCAAACAACACAAGGTCGCGTTGCAGACTGGATATTTGCAATATCGATGGGAATAGCTTGTGGGGTGTTTGTGTATGTGTCGATAAACCATTTGTTACGAGGTTACAAGGCACAAAAGCCGTCATCCGTGGATACTCAGTTTCATAAGTTATTAGCTGTAACGTTGGGGCTAGGGGTGATTGCTGTTGTCATGATATGGGATACATGA 972 42.18 MSRYFLLFISLLLVLIISASAHGGDDDEDEEAGPKPNLRSKSLILVKIWCLILVFVGTFVGGVSPYFFKWNEGFLVLGTQFAGGVFLGTALMHFLSDANETFQDLTSVEYPFAFMLACGGYLLTMSADCVISYVYGKQNGSDVEDQEDSRNGKDENAPAKIGITSASSLGDSILLIVALCFHSVFEGIAIGISDTKADAWKALWTISLHKIFAAIAMGIALLRMIPDRPLLSCASYAFAFAISSPIGVAIGIVIDQTTQGRVADWIFAISMGIACGVFVYVSINHLLRGYKAQKPSSVDTQFHKLLAVTLGLGVIAVVMIWDT 323
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00563 323 Pfam ZIP Zinc transporter 45 318 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Cind3g00563 323 PANTHER ZINC-IRON TRANSPORTER 43 321 - GO:0005385(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00563 K14709 solute carrier family 39 (zinc transporter), member 1/2/3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:129837852 Cind3g00563 Cind-Chr3:293576368 dispersed
Cind Cind-Chr3:293576368 Cind6g00219 Cind-Chr6:299659657 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cind1g00014 . 45 168 InOrganic Solute Cotransporters gene family gene family AT5G59030 47.581 5.31e-34 115.0
Cind1g00678 ACH 1 794 InOrganic Solute Cotransporters gene family gene family AT2G40540 77.307 0.0 1266.0
Cind1g00788 . 121 168 InOrganic Solute Cotransporters gene family gene family AT5G67330 54.167 3.81e-08 49.7
Cind1g00980 . 78 508 InOrganic Solute Cotransporters gene family gene family AT1G47240 82.831 0.0 749.0
Cind1g00989 . 49 442 InOrganic Solute Cotransporters gene family gene family AT2G23150 65.736 0.0 532.0
Cind1g01144 . 32 648 InOrganic Solute Cotransporters gene family gene family AT5G13550 71.89 0.0 914.0
Cind1g02532 . 273 653 InOrganic Solute Cotransporters gene family gene family AT3G15990 73.753 0.0 577.0
Cind1g02667 . 4 408 InOrganic Solute Cotransporters gene family gene family AT1G10970 62.919 3.60e-168 476.0
Cind1g03942 . 91 172 InOrganic Solute Cotransporters gene family gene family AT2G01280 40.0 4.64e-17 79.0
Cind1g04091 . 164 221 InOrganic Solute Cotransporters gene family gene family AT4G04850 51.724 8.02e-08 46.2
Cind1g04097 . 160 198 InOrganic Solute Cotransporters gene family gene family AT4G04850 64.103 6.68e-07 43.1
Cind1g05238 . 19 975 InOrganic Solute Cotransporters gene family gene family AT1G30450 76.24 0.0 1487.0
Cind1g07227 . 513 569 InOrganic Solute Cotransporters gene family gene family AT4G04850 58.621 1.51e-15 69.7
Cind1g07568 . 13 355 InOrganic Solute Cotransporters gene family gene family AT3G12750 55.211 1.53e-138 396.0
Cind1g07657 . 585 618 InOrganic Solute Cotransporters gene family gene family AT1G30450 70.588 1.34e-09 52.4
Cind1g07658 . 720 975 InOrganic Solute Cotransporters gene family gene family AT1G30450 68.75 4.02e-110 335.0
Cind2g00360 . 26 710 InOrganic Solute Cotransporters gene family gene family AT2G30070 37.736 1.10e-161 480.0
Cind2g00698 . 45 249 InOrganic Solute Cotransporters gene family gene family AT2G37920 53.469 6.66e-80 241.0
Cind2g00965 . 19 975 InOrganic Solute Cotransporters gene family gene family AT1G30450 79.175 0.0 1534.0
Cind2g03154 . 28 613 InOrganic Solute Cotransporters gene family gene family AT3G26570 72.007 0.0 780.0
Cind2g05214 . 679 745 InOrganic Solute Cotransporters gene family gene family AT4G00630 67.164 1.92e-18 84.7
Cind2g05905 . 422 531 InOrganic Solute Cotransporters gene family gene family AT1G80830 36.134 1.60e-16 72.4
Cind2g05906 . 14 402 InOrganic Solute Cotransporters gene family gene family AT1G80830 66.667 0.0 517.0
Cind2g05908 . 14 531 InOrganic Solute Cotransporters gene family gene family AT1G80830 56.522 0.0 569.0
Cind2g05912 . 28 498 InOrganic Solute Cotransporters gene family gene family AT1G80830 65.605 0.0 636.0
Cind2g06038 . 959 986 InOrganic Solute Cotransporters gene family gene family AT1G01790 82.143 3.49e-07 51.6
Cind2g06150 . 32 364 InOrganic Solute Cotransporters gene family gene family AT1G31260 55.556 3.30e-127 367.0
Cind3g00222 . 1 353 InOrganic Solute Cotransporters gene family gene family AT5G59520 59.718 1.23e-135 388.0
Cind3g00312 . 1 364 InOrganic Solute Cotransporters gene family gene family AT1G31260 51.902 1.10e-126 366.0
Cind3g00382 . 158 195 InOrganic Solute Cotransporters gene family gene family AT1G30450 81.579 6.93e-14 65.9
Cind3g00392 . 85 441 InOrganic Solute Cotransporters gene family gene family AT2G25680 63.144 2.40e-161 459.0
Cind3g00563 . 24 326 InOrganic Solute Cotransporters gene family gene family AT1G55910 66.346 6.57e-142 402.0
Cind3g00758 . 136 169 InOrganic Solute Cotransporters gene family gene family AT5G67330 58.824 7.17e-06 43.9
Cind3g01862 . 17 653 InOrganic Solute Cotransporters gene family gene family AT1G22150 72.37 0.0 932.0
Cind3g02209 . 363 624 InOrganic Solute Cotransporters gene family gene family AT4G04850 76.806 5.25e-136 402.0
Cind3g02214 . 6 624 InOrganic Solute Cotransporters gene family gene family AT4G04850 72.1 0.0 858.0
Cind3g03315 . 30 143 InOrganic Solute Cotransporters gene family gene family AT5G59040 41.228 4.62e-25 91.7
Cind3g03679 . 166 1174 InOrganic Solute Cotransporters gene family gene family AT4G00630 68.335 0.0 1231.0
Cind3g03770 . 29 360 InOrganic Solute Cotransporters gene family gene family AT1G05300 55.233 6.39e-125 362.0
Cind3g04295 . 44 408 InOrganic Solute Cotransporters gene family gene family AT1G10970 49.864 3.30e-111 327.0
Cind3g04551 ACH 1 146 InOrganic Solute Cotransporters gene family gene family AT5G20650 50.0 3.02e-48 150.0
Cind3g05563 . 1 397 InOrganic Solute Cotransporters gene family gene family AT2G46800 47.922 2.92e-109 325.0
Cind4g01621 . 30 360 InOrganic Solute Cotransporters gene family gene family AT1G05300 53.892 2.20e-123 357.0
Cind4g01622 . 71 355 InOrganic Solute Cotransporters gene family gene family AT3G12750 44.108 2.36e-70 217.0
Cind4g01798 . 1 650 InOrganic Solute Cotransporters gene family gene family AT5G13550 71.121 0.0 936.0
Cind4g02450 . 125 197 InOrganic Solute Cotransporters gene family gene family AT2G37920 60.274 1.79e-24 95.5
Cind4g03448 ACH 27 509 InOrganic Solute Cotransporters gene family gene family AT2G23150 74.948 0.0 748.0
Cind4g02943 . 1 143 InOrganic Solute Cotransporters gene family gene family AT5G20650 53.103 1.55e-48 151.0
Cind4g04337 . 6 622 InOrganic Solute Cotransporters gene family gene family AT4G04850 62.222 0.0 669.0
Cind4g04339 . 107 190 InOrganic Solute Cotransporters gene family gene family AT4G04850 77.381 1.78e-34 125.0
Cind4g04434 . 1 650 InOrganic Solute Cotransporters gene family gene family AT3G15990 72.894 0.0 983.0
Cind4g04485 . 26 442 InOrganic Solute Cotransporters gene family gene family AT1G80310 70.813 0.0 528.0
Cind4g05022 . 20 656 InOrganic Solute Cotransporters gene family gene family AT1G22150 76.369 0.0 973.0
Cind4g05023 . 275 656 InOrganic Solute Cotransporters gene family gene family AT1G22150 73.385 0.0 548.0
Cind4g05024 . 49 676 InOrganic Solute Cotransporters gene family gene family AT5G10180 63.091 0.0 810.0
Cind4g05025 . 44 676 InOrganic Solute Cotransporters gene family gene family AT5G10180 63.722 0.0 825.0
Cind4g05065 . 512 592 InOrganic Solute Cotransporters gene family gene family AT4G04850 43.158 1.68e-16 72.0
Cind4g05237 . 8 519 InOrganic Solute Cotransporters gene family gene family AT1G15960 77.778 0.0 828.0
Cind5g00217 . 61 432 InOrganic Solute Cotransporters gene family gene family AT3G58810 63.467 1.80e-152 435.0
Cind5g01221 . 1 496 InOrganic Solute Cotransporters gene family gene family AT2G01280 36.984 2.27e-85 275.0
Cind5g03053 . 576 660 InOrganic Solute Cotransporters gene family gene family AT1G01790 83.529 3.33e-45 153.0
Cind5g02834 . 537 569 InOrganic Solute Cotransporters gene family gene family AT4G04850 55.882 2.44e-06 42.4
Cind6g00219 . 154 353 InOrganic Solute Cotransporters gene family gene family AT5G59520 47.291 1.14e-49 164.0
Cind6g00265 . 422 531 InOrganic Solute Cotransporters gene family gene family AT1G80830 37.815 3.27e-17 74.3
Cind6g00742 . 20 196 InOrganic Solute Cotransporters gene family gene family AT1G22150 70.621 4.01e-85 262.0
Cind6g00743 . 489 653 InOrganic Solute Cotransporters gene family gene family AT1G78000 73.939 3.47e-82 254.0
Cind6g00931 . 17 712 InOrganic Solute Cotransporters gene family gene family AT2G30070 70.19 0.0 1072.0
Cind6g01219 . 30 785 InOrganic Solute Cotransporters gene family gene family AT4G13420 53.816 0.0 820.0
Cind6g01455 . 30 785 InOrganic Solute Cotransporters gene family gene family AT4G13420 53.553 0.0 812.0
Cind6g01456 . 7 349 InOrganic Solute Cotransporters gene family gene family AT4G13420 57.593 2.36e-133 407.0
Cind6g01786 . 28 135 InOrganic Solute Cotransporters gene family gene family AT5G59040 44.444 1.71e-26 95.1
Cind6g02108 . 28 135 InOrganic Solute Cotransporters gene family gene family AT5G59040 44.444 5.80e-27 96.7
Cind6g02155 . 396 519 InOrganic Solute Cotransporters gene family gene family AT1G80830 46.617 1.45e-30 112.0
Cind6g03093 . 119 637 InOrganic Solute Cotransporters gene family gene family AT4G02700 69.364 0.0 730.0
Cind6g02478 . 29 322 InOrganic Solute Cotransporters gene family gene family AT1G05300 50.338 7.18e-96 287.0
Cind6g02607 . 93 278 InOrganic Solute Cotransporters gene family gene family AT4G00630 44.041 1.80e-36 135.0
Cind7g01013 . 40 178 InOrganic Solute Cotransporters gene family gene family AT2G37920 77.698 1.51e-78 238.0
Cind7g01246 . 312 419 InOrganic Solute Cotransporters gene family gene family AT1G78000 80.556 1.90e-58 189.0
Cind7g00072 . 563 948 InOrganic Solute Cotransporters gene family gene family AT1G30450 72.021 0.0 561.0
Cind7g00234 . 1 107 InOrganic Solute Cotransporters gene family gene family AT5G13550 38.318 2.66e-20 82.4
Cind7g02167 ACH 27 503 InOrganic Solute Cotransporters gene family gene family AT2G23150 74.633 0.0 741.0
Cind7g03725 . 563 975 InOrganic Solute Cotransporters gene family gene family AT1G30450 74.334 0.0 622.0
Cind7g04285 . 678 745 InOrganic Solute Cotransporters gene family gene family AT4G00630 69.118 1.66e-22 90.5
Cind7g04299 . 158 324 InOrganic Solute Cotransporters gene family gene family AT1G30450 52.096 7.58e-44 152.0
Cind7g05215 ACH 1 794 InOrganic Solute Cotransporters gene family gene family AT2G40540 77.599 0.0 1270.0
Cind8g00528 ACH 44 146 InOrganic Solute Cotransporters gene family gene family AT5G20650 48.571 3.27e-25 90.5
Cind8g01889 . 1 341 InOrganic Solute Cotransporters gene family gene family AT2G30080 66.379 1.25e-162 456.0
Cind8g02206 . 45 164 InOrganic Solute Cotransporters gene family gene family AT5G59030 41.803 1.05e-25 93.2
Cind8g02213 . 45 168 InOrganic Solute Cotransporters gene family gene family AT5G59030 46.774 8.57e-36 120.0
Cind8g03151 . 50 197 InOrganic Solute Cotransporters gene family gene family AT2G37920 72.297 1.82e-75 228.0
Cind8g03340 . 950 969 InOrganic Solute Cotransporters gene family gene family AT1G01790 90.0 3.50e-06 42.0
Cind9g01008 . 1 100 InOrganic Solute Cotransporters gene family gene family AT1G60160 57.658 1.08e-29 116.0
Cind9g01009 ACH 532 827 InOrganic Solute Cotransporters gene family gene family AT1G60160 70.27 3.02e-150 439.0
Cind9g01127 . 284 362 InOrganic Solute Cotransporters gene family gene family AT1G31260 68.354 3.48e-31 111.0
Cind9g01128 . 12 364 InOrganic Solute Cotransporters gene family gene family AT1G31260 64.124 1.02e-157 444.0
Cind9g01191 . 144 408 InOrganic Solute Cotransporters gene family gene family AT1G10970 54.682 6.04e-85 257.0
Cind9g01193 . 57 108 InOrganic Solute Cotransporters gene family gene family AT1G60960 42.308 1.84e-08 50.4
Cind9g01196 . 140 190 InOrganic Solute Cotransporters gene family gene family AT1G10970 43.137 1.35e-07 47.8
Cind9g02280 . 6 334 InOrganic Solute Cotransporters gene family gene family AT3G61940 61.446 1.57e-132 378.0