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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g00565 ATGACCACTGTTGGATATGGAGACCTTATTCCCAATAGCACTGTTACAAAACTGCTTTCATGTGCTTTTGTATTCTCGGGTATGACCCTTATTGGATTTAGTCTCAGTAGAGCTGCTGACTGTTTGGTTGAAAATCAAGAAATCTTGCTGGTGAAAGCTTTACATTTACGTCAACAACCTAATTCAATGCAAGTACTGAAAGAAATGGAAACAAATAGAGTGAGATATAGGTGTATGATATTTTCCATCTTGCTTGTGGTCCTTATAGCTTCCGGGACTATATTTTTAACAACAGTTGAGAAAATGGAGATCGTTGATGCTTTCTATTGTGTTTGTTCCACCATTACAACTTTAGGATATGGAGATAAAAGCTTTTCTACGCCTGCTGGGAGGATCTTTGCTATTTTTTGGATATTGATGAGCACTATATGTTTAGCTCAGTTGCTATTTGCTTTTGCTGAGTTTTATACAGAGACTAGGCAGAGGTCGTTGGTGCAATGGGTTCTTACAAGAAAAACAACCGCAGCTGACCTTGAAGCAGCTGATCTTGATGATGATGGGGTTGTGGGGGCTGCGGAGTTTGTGATTTTTAAGCTAAAAGAGATGGGAAAGATCAATGAAGAAGACATATCGCTTATTTTGACCGAGTTTAGGAATCTTGATGTGGACGAGTCAGGGACTTTGTCTCCCTCTGACATTTATCTTGCTCAATCGACAAGGAAGGACAGGTGA 732 39.75 MTTVGYGDLIPNSTVTKLLSCAFVFSGMTLIGFSLSRAADCLVENQEILLVKALHLRQQPNSMQVLKEMETNRVRYRCMIFSILLVVLIASGTIFLTTVEKMEIVDAFYCVCSTITTLGYGDKSFSTPAGRIFAIFWILMSTICLAQLLFAFAEFYTETRQRSLVQWVLTRKTTAADLEAADLDDDGVVGAAEFVIFKLKEMGKINEEDISLILTEFRNLDVDESGTLSPSDIYLAQSTRKDR 243
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g00565 243 SUPERFAMILY Voltage-gated potassium channels 1 51 - -
Cind3g00565 243 ProSitePatterns EF-hand calcium-binding domain. 221 233 IPR018247 -
Cind3g00565 243 ProSitePatterns EF-hand calcium-binding domain. 182 194 IPR018247 -
Cind3g00565 243 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 1 208 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(PANTHER)|GO:0071805(InterPro)
Cind3g00565 243 Pfam Ion channel 83 157 IPR013099 -
Cind3g00565 243 Pfam Ion channel 1 43 IPR013099 -
Cind3g00565 243 SUPERFAMILY Voltage-gated potassium channels 61 156 - -
Cind3g00565 243 SUPERFAMILY EF-hand 166 234 IPR011992 -
Cind3g00565 243 Gene3D - 58 162 - -
Cind3g00565 243 Gene3D - 1 48 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g00565 K05389 potassium channel subfamily K, other eukaryote
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:293476248 Cind5g02518 Cind-Chr5:150133503 dispersed
Cind Cind-Chr8:68145041 Cind3g00565 Cind-Chr3:293476248 transposed
Cind Cind-Chr2:347429218 Cind3g00565 Cind-Chr3:293476248 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cind1g00891 . 441 556 Ion Channels gene family AT2G24720 33.333 1.50e-14 72.0
Cind1g00928 . 527 715 Ion Channels gene family AT2G25600 34.021 1.54e-14 69.7
Cind1g01716 . 25 661 Ion Channels gene family AT4G32650 59.815 0.0 763.0
Cind1g02264 . 196 717 Ion Channels gene family AT5G57940 62.963 0.0 695.0
Cind1g02176 . 50 634 Ion Channels gene family AT2G28260 59.316 0.0 751.0
Cind1g02626 . 269 304 Ion Channels gene family AT5G37500 88.889 1.54e-16 71.2
Cind1g04453 ACH 8 779 Ion Channels gene family AT5G49890 77.062 0.0 1184.0
Cind1g05228 . 21 726 Ion Channels gene family AT5G15410 70.851 0.0 990.0
Cind1g05636 . 80 202 Ion Channels gene family AT5G54250 60.8 1.43e-46 160.0
Cind1g05637 . 236 692 Ion Channels gene family AT5G54250 83.406 0.0 807.0
Cind1g04642 . 490 514 Ion Channels gene family AT2G26650 72.0 5.72e-07 44.7
Cind1g04934 . 41 813 Ion Channels gene family AT5G48410 40.84 0.0 573.0
Cind1g04935 . 26 738 Ion Channels gene family AT5G48400 40.621 1.07e-166 500.0
Cind1g04936 . 256 611 Ion Channels gene family AT5G48410 43.631 5.47e-91 295.0
Cind1g04937 . 43 825 Ion Channels gene family AT3G07520 39.925 0.0 582.0
Cind1g04938 . 7 291 Ion Channels gene family AT3G07520 35.54 1.13e-54 191.0
Cind1g04939 . 41 813 Ion Channels gene family AT5G48410 40.025 0.0 552.0
Cind1g04940 . 164 800 Ion Channels gene family AT5G11180 31.587 9.01e-91 296.0
Cind1g06644 . 50 844 Ion Channels gene family AT4G35290 56.32 0.0 917.0
Cind1g06645 . 510 930 Ion Channels gene family AT2G17260 59.145 1.01e-171 503.0
Cind1g06647 . 30 809 Ion Channels gene family AT4G35290 56.978 0.0 919.0
Cind1g06649 . 81 173 Ion Channels gene family AT4G35290 54.839 2.22e-30 115.0
Cind1g06650 . 30 872 Ion Channels gene family AT4G35290 54.438 0.0 922.0
Cind1g06654 . 55 930 Ion Channels gene family AT2G17260 55.404 0.0 970.0
Cind1g06694 . 40 900 Ion Channels gene family AT4G35290 56.829 0.0 996.0
Cind1g06695 . 30 809 Ion Channels gene family AT4G35290 56.85 0.0 919.0
Cind1g06699 . 216 611 Ion Channels gene family AT4G35290 52.513 2.47e-143 429.0
Cind1g06702 . 30 744 Ion Channels gene family AT4G35290 53.888 0.0 791.0
Cind1g06546 . 59 358 Ion Channels gene family AT5G55630 54.667 5.22e-118 344.0
Cind1g06965 . 486 615 Ion Channels gene family AT2G24610 58.333 1.20e-43 151.0
Cind1g06966 . 486 586 Ion Channels gene family AT2G24610 67.961 7.86e-43 147.0
Cind1g06967 . 486 586 Ion Channels gene family AT2G24610 70.297 1.33e-44 152.0
Cind1g06968 . 232 704 Ion Channels gene family AT3G48010 63.924 0.0 620.0
Cind1g07234 . 407 514 Ion Channels gene family AT5G53130 47.222 1.38e-25 96.7
Cind1g07287 . 725 795 Ion Channels gene family AT4G22200 53.521 7.41e-17 77.0
Cind1g07330 . 71 824 Ion Channels gene family AT3G02850 60.305 0.0 985.0
Cind1g07331 . 740 814 Ion Channels gene family AT5G37500 44.737 1.76e-17 73.2
Cind2g01022 . 543 685 Ion Channels gene family AT5G37500 29.452 9.14e-07 50.4
Cind2g01304 . 64 733 Ion Channels gene family AT3G02850 63.636 0.0 903.0
Cind2g03406 . 198 678 Ion Channels gene family AT2G28260 74.545 0.0 767.0
Cind2g03967 . 415 463 Ion Channels gene family AT5G15410 65.306 2.78e-07 46.6
Cind2g04781 . 61 222 Ion Channels gene family AT2G29120 47.531 8.90e-47 160.0
Cind2g04792 . 35 830 Ion Channels gene family AT2G29110 31.79 1.16e-114 370.0
Cind2g05325 . 227 884 Ion Channels gene family AT2G29110 41.272 2.51e-164 496.0
Cind2g05387 . 20 873 Ion Channels gene family AT2G29120 41.21 0.0 682.0
Cind2g05503 . 86 271 Ion Channels gene family AT5G40890 28.5 9.02e-06 47.4
Cind2g05620 . 61 358 Ion Channels gene family AT5G55630 46.98 1.35e-90 273.0
Cind2g05634 . 56 340 Ion Channels gene family AT5G55630 42.807 2.17e-82 262.0
Cind2g06024 . 533 613 Ion Channels gene family AT2G26650 43.21 3.59e-11 58.5
Cind2g06045 . 35 885 Ion Channels gene family AT2G25600 54.779 0.0 919.0
Cind2g06056 . 579 636 Ion Channels gene family AT4G32500 48.276 6.71e-09 52.8
Cind3g00650 . 1 719 Ion Channels gene family AT4G30360 66.757 0.0 992.0
Cind3g00660 . 454 630 Ion Channels gene family AT2G24720 36.517 7.40e-31 121.0
Cind3g00565 . 120 360 Ion Channels gene family AT5G55630 65.56 3.31e-116 335.0
Cind3g00667 . 706 781 Ion Channels gene family AT4G35290 59.211 1.53e-24 96.7
Cind3g01617 . 67 356 Ion Channels gene family AT5G55630 54.983 1.22e-114 334.0
Cind3g01618 . 120 352 Ion Channels gene family AT5G55630 54.661 2.06e-90 269.0
Cind3g02171 . 246 525 Ion Channels gene family AT2G24720 30.634 6.97e-37 140.0
Cind3g02366 . 70 617 Ion Channels gene family AT1G05200 60.98 0.0 704.0
Cind3g02368 . 19 900 Ion Channels gene family AT2G32400 49.153 0.0 856.0
Cind3g02443 . 34 859 Ion Channels gene family AT2G29120 34.906 5.66e-153 473.0
Cind3g02444 . 16 846 Ion Channels gene family AT2G29120 35.906 4.13e-153 474.0
Cind3g02446 . 16 859 Ion Channels gene family AT2G29120 35.409 6.56e-159 489.0
Cind3g02641 . 8 651 Ion Channels gene family AT5G46240 45.339 1.39e-180 526.0
Cind3g02760 ACH 132 548 Ion Channels gene family AT5G49890 79.376 0.0 669.0
Cind3g04588 . 560 719 Ion Channels gene family AT2G25600 28.977 1.07e-07 53.9
Cind3g04602 . 543 756 Ion Channels gene family AT3G02850 31.222 5.03e-14 73.2
Cind3g05050 . 11 900 Ion Channels gene family AT2G32400 54.749 0.0 995.0
Cind3g05052 . 56 932 Ion Channels gene family AT1G05200 62.104 0.0 1142.0
Cind3g05063 . 53 100 Ion Channels gene family AT2G28260 45.833 5.62e-12 60.1
Cind3g05103 . 465 660 Ion Channels gene family AT5G48410 48.544 2.80e-56 191.0
Cind3g05127 . 204 393 Ion Channels gene family AT3G51480 54.737 6.84e-69 223.0
Cind3g05277 . 518 745 Ion Channels gene family AT2G23980 80.087 1.02e-122 363.0
Cind3g05278 . 1 462 Ion Channels gene family AT5G57940 68.966 0.0 634.0
Cind3g05480 . 304 825 Ion Channels gene family AT2G26650 47.048 4.21e-140 430.0
Cind3g05614 ACH 275 692 Ion Channels gene family AT5G54250 65.55 0.0 538.0
Cind3g05841 . 7 764 Ion Channels gene family AT5G33280 69.17 0.0 1031.0
Cind4g01110 . 556 669 Ion Channels gene family AT2G26650 51.754 4.56e-33 122.0
Cind4g01545 . 300 390 Ion Channels gene family AT5G14870 73.626 1.40e-44 150.0
Cind4g01700 . 638 734 Ion Channels gene family AT3G07520 32.673 4.49e-11 59.3
Cind4g01839 . 330 699 Ion Channels gene family AT5G14870 73.243 0.0 548.0
Cind4g01981 . 14 878 Ion Channels gene family AT2G29120 44.381 0.0 736.0
Cind4g02573 . 381 448 Ion Channels gene family AT5G54250 41.429 1.23e-07 49.7
Cind4g02586 ACH 21 778 Ion Channels gene family AT3G27170 77.207 0.0 1200.0
Cind4g04549 . 548 770 Ion Channels gene family AT2G26650 26.667 1.98e-14 70.5
Cind4g05308 . 526 675 Ion Channels gene family AT3G02850 28.477 1.08e-07 49.7
Cind4g05774 . 567 669 Ion Channels gene family AT2G17260 68.932 1.85e-45 157.0
Cind5g01176 . 380 459 Ion Channels gene family AT2G26650 35.714 3.09e-12 58.5
Cind5g02518 . 57 357 Ion Channels gene family AT5G55630 51.987 2.35e-115 336.0
Cind5g02806 . 599 689 Ion Channels gene family AT2G26650 48.352 2.74e-23 95.5
Cind5g03102 . 1 725 Ion Channels gene family AT2G24610 65.11 0.0 957.0
Cind5g03192 . 60 232 Ion Channels gene family AT4G32500 67.63 2.05e-88 275.0
Cind5g03692 . 7 385 Ion Channels gene family AT4G18160 61.979 2.44e-153 437.0
Cind5g04550 . 543 620 Ion Channels gene family AT2G26650 39.024 5.57e-07 46.2
Cind5g05168 . 58 932 Ion Channels gene family AT1G05200 58.617 0.0 1104.0
Cind5g05170 . 58 932 Ion Channels gene family AT1G05200 59.751 0.0 1105.0
Cind5g05171 . 58 931 Ion Channels gene family AT1G05200 58.636 0.0 1102.0
Cind5g05342 . 1 615 Ion Channels gene family AT5G53130 60.635 0.0 777.0
Cind5g05347 . 1 716 Ion Channels gene family AT5G53130 63.034 0.0 915.0
Cind6g00115 . 35 825 Ion Channels gene family AT3G07520 36.727 9.19e-178 531.0
Cind6g01059 . 145 694 Ion Channels gene family AT5G53130 57.487 0.0 659.0
Cind6g01600 . 7 385 Ion Channels gene family AT4G18160 56.456 6.96e-140 403.0
Cind6g01697 . 302 358 Ion Channels gene family AT2G26650 82.456 1.63e-26 101.0
Cind6g03073 . 200 310 Ion Channels gene family AT5G37500 81.982 3.48e-58 198.0
Cind6g02485 . 275 340 Ion Channels gene family AT4G22200 60.606 1.31e-20 82.8
Cind6g03493 . 421 502 Ion Channels gene family AT4G01010 62.195 1.74e-32 120.0
Cind6g03946 . 161 372 Ion Channels gene family AT4G01840 65.297 4.69e-97 286.0
Cind7g00674 . 5 716 Ion Channels gene family AT4G03560 65.205 0.0 994.0
Cind7g00708 . 12 916 Ion Channels gene family AT1G42540 63.797 0.0 1218.0
Cind7g00837 . 527 814 Ion Channels gene family AT5G37500 49.135 8.83e-93 289.0
Cind7g00839 . 16 824 Ion Channels gene family AT3G02850 67.199 0.0 1149.0
Cind7g00840 . 727 824 Ion Channels gene family AT3G02850 46.667 1.12e-21 88.2
Cind7g00842 . 347 633 Ion Channels gene family AT3G02850 61.0 1.47e-118 376.0
Cind7g00843 . 100 320 Ion Channels gene family AT3G02850 57.466 5.48e-78 252.0
Cind7g00888 . 5 745 Ion Channels gene family AT3G17700 61.651 0.0 897.0
Cind7g00007 . 12 914 Ion Channels gene family AT1G42540 64.53 0.0 1223.0
Cind7g02380 ACH 124 778 Ion Channels gene family AT3G27170 70.274 0.0 943.0
Cind7g03019 . 226 678 Ion Channels gene family AT2G28260 71.036 0.0 689.0
Cind7g03149 ACH 543 727 Ion Channels gene family AT4G32500 33.493 5.47e-21 95.1
Cind7g03327 . 4 900 Ion Channels gene family AT3G51480 59.136 0.0 1121.0
Cind7g03356 . 551 733 Ion Channels gene family AT3G02850 32.487 3.35e-14 70.1
Cind7g03399 . 450 718 Ion Channels gene family AT5G48410 36.14 2.75e-51 180.0
Cind7g03467 . 347 415 Ion Channels gene family AT3G02850 73.913 6.12e-29 112.0
Cind7g03584 . 1 716 Ion Channels gene family AT5G53130 74.931 0.0 1100.0
Cind7g04424 . 292 557 Ion Channels gene family AT5G15410 48.689 6.59e-70 235.0
Cind7g04635 . 568 666 Ion Channels gene family AT5G14870 36.364 7.57e-16 69.7
Cind7g04636 . 176 552 Ion Channels gene family AT2G28260 48.724 1.36e-129 392.0
Cind7g04701 . 552 641 Ion Channels gene family AT3G02850 40.0 1.65e-11 59.3
Cind7g04903 . 12 98 Ion Channels gene family AT1G42540 54.023 1.87e-26 103.0
Cind8g00144 . 58 932 Ion Channels gene family AT1G05200 66.061 0.0 1226.0
Cind8g00218 . 34 891 Ion Channels gene family AT2G29120 27.968 1.88e-91 307.0
Cind8g00219 . 34 761 Ion Channels gene family AT2G24720 28.342 3.27e-84 283.0
Cind8g00231 . 5 751 Ion Channels gene family AT4G22200 62.357 0.0 974.0
Cind8g00431 . 578 784 Ion Channels gene family AT5G11210 33.493 1.59e-26 105.0
Cind8g00432 . 531 882 Ion Channels gene family AT2G17260 35.556 1.26e-55 196.0
Cind8g00433 . 496 873 Ion Channels gene family AT2G17260 33.594 4.53e-57 200.0
Cind8g00761 . 276 717 Ion Channels gene family AT5G57940 63.333 0.0 544.0
Cind8g01459 . 30 904 Ion Channels gene family AT4G35290 62.671 0.0 1147.0
Cind8g01257 . 5 628 Ion Channels gene family AT5G37500 49.765 0.0 585.0
Cind8g01318 . 37 872 Ion Channels gene family AT2G29120 44.795 0.0 732.0
Cind8g01319 . 37 872 Ion Channels gene family AT2G29120 47.647 0.0 800.0
Cind8g01321 . 357 886 Ion Channels gene family AT2G29120 45.62 5.21e-156 470.0
Cind8g01322 . 14 312 Ion Channels gene family AT2G29120 46.154 3.12e-81 262.0
Cind8g01323 . 37 872 Ion Channels gene family AT2G29120 47.294 0.0 800.0
Cind8g01330 . 37 888 Ion Channels gene family AT2G29120 46.066 0.0 769.0
Cind8g01698 . 8 772 Ion Channels gene family AT5G26240 81.548 0.0 1211.0
Cind8g02805 . 381 690 Ion Channels gene family AT5G11210 36.392 1.50e-60 206.0
Cind8g02806 . 37 828 Ion Channels gene family AT3G07520 36.625 8.61e-159 488.0
Cind8g03412 . 40 81 Ion Channels gene family AT5G26240 73.81 3.15e-15 70.5
Cind8g03508 . 120 309 Ion Channels gene family AT5G55630 62.105 2.54e-83 249.0
Cind8g03783 . 525 713 Ion Channels gene family AT5G37500 32.124 2.31e-13 71.6
Cind8g03962 . 552 899 Ion Channels gene family AT2G17260 33.989 2.27e-52 184.0
Cind8g03963 . 767 891 Ion Channels gene family AT2G24710 27.068 9.82e-08 47.4
Cind8g03965 . 384 767 Ion Channels gene family AT5G11210 33.505 1.07e-57 202.0
Cind8g03966 . 384 816 Ion Channels gene family AT5G11210 30.769 3.17e-60 207.0
Cind8g03967 . 524 805 Ion Channels gene family AT5G11180 31.419 2.89e-33 127.0
Cind8g03968 . 654 853 Ion Channels gene family AT2G29110 34.483 1.07e-26 108.0
Cind8g03972 . 696 932 Ion Channels gene family AT2G17260 32.941 4.63e-24 102.0
Cind8g03973 . 445 563 Ion Channels gene family AT2G24710 34.959 3.47e-17 76.6
Cind8g03974 . 384 816 Ion Channels gene family AT5G11210 31.461 1.03e-56 208.0
Cind8g03975 . 439 584 Ion Channels gene family AT2G29100 35.762 3.45e-24 95.9
Cind8g03977 . 669 784 Ion Channels gene family AT5G11180 34.483 2.97e-17 75.5
Cind8g03980 . 467 768 Ion Channels gene family AT4G35290 35.179 5.40e-48 174.0
Cind8g03981 . 384 730 Ion Channels gene family AT5G11210 32.184 1.07e-46 168.0
Cind8g03982 . 384 816 Ion Channels gene family AT5G11210 30.995 1.19e-57 207.0
Cind8g03983 . 654 853 Ion Channels gene family AT2G29110 34.314 2.40e-25 103.0
Cind8g03985 . 582 767 Ion Channels gene family AT5G11210 37.895 7.63e-27 105.0
Cind8g03987 . 552 899 Ion Channels gene family AT2G17260 33.427 1.48e-48 173.0
Cind8g03988 . 462 717 Ion Channels gene family AT5G11180 32.061 9.81e-30 116.0
Cind8g03989 . 384 816 Ion Channels gene family AT5G11210 31.674 5.45e-61 210.0
Cind8g03990 . 459 627 Ion Channels gene family AT2G32400 36.0 5.03e-28 108.0
Cind8g03996 . 495 895 Ion Channels gene family AT2G17260 30.882 4.06e-46 167.0
Cind8g04005 . 381 762 Ion Channels gene family AT5G11210 33.333 2.52e-56 196.0
Cind8g04008 . 431 616 Ion Channels gene family AT2G29100 33.333 1.33e-25 105.0
Cind8g04010 . 494 895 Ion Channels gene family AT2G17260 34.146 1.00e-56 199.0
Cind9g00672 . 286 380 Ion Channels gene family AT3G02850 73.958 3.61e-45 155.0
Cind9g02933 . 497 538 Ion Channels gene family AT5G15410 50.0 9.59e-08 52.4
Cind9g03343 . 30 662 Ion Channels gene family AT4G32650 57.795 0.0 716.0
Cind9g04015 . 582 618 Ion Channels gene family AT2G25600 75.676 1.24e-12 60.8