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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g01639 ATGCAGCAGCAAGATCGAAGGAAAAAGAGTCCAAAAGACATTGAGTTCTTTACTGAATACGGTGAAGCAAACCGATACAAAATCCTAGAGATTATAGGAAAGGGAAGTTATGGAGTCGTGTGTGCAGCCATTGACACACAGACCGGGGAGAAGGTTGCAATAAAGAAAATTACCAACATTTTTGAACATTCATCCGATGCTATTCGAATTTTGCGTGAGATTAAATTGCTTAGGCTTCTACGCCATCCTGATATTGTTGAAATTAAACGGATCATGTTGCCACCATCAAGGCGGGAATTTAAAGATATTTATGTTGTATTTGAACTCATGGAGTCCGATCTTCACCAAGTCATCAAGGCCAATGATGACTTGACACACGAGCACCATCGTTTTTTCCTGTATCAAATGCTACGAGCTTTGAAATATATGCACACAGCAAATGTGTATCATCGAGATCTAAAACCAAAGAACATATTAGCAAATGCAAATTGCAAACTAAAGATATGCGATTTTGGACTTGCAAGGGCTGCATTTACTGATACACCAACGACTATATTTTGGACGGATTATGTTGCAACAAGATGGTATAGGGCTCCTGAGCTATGCGGATCTTTTTATTCAAAGTATACCCCGGCTGTTGATATTTGGGGAATTGGATGTATATTCGCTGAAGTATTGACCGGAAAGCCACTCTTTCCTGGCAAAAGCGTAGTACATCAGTTGGAGCTTATCACTGATCTTCTTGGAACACCTTCACCAGATACAATTTCCAGAGTCCGTAATGACAAGGCAAGAAAATACTTGACAGATATGCGAAGAAAGAAACCTGTGACATTTTCAGAGAAATTTTCAAATGTCGACCCTTTGGCACTTGGGCTACTGCAAAGGCTGTTAGCGTTTGATCCAAAGGATCGACCAACTGCAGAACAGGCACTAGCTGATCCTTACTTCAAGGGACTATCAAAGGTTGAAAGGGAACCTTCGTGTCAGCCATTCTCTAAATTGGAGTTTGAGTTTGAGAGGCGAAGAGTTACAAAAGAGGATATTAGGGAATTGATATTTCGCGAGATTCTTGAATACCATCCTCAGTTGCTAAAAGATTACATGGCTGGAAATGATCGCACAAGTTTTCTTTATCCTAGTGCCATTGGTCAATTTAGGAGACAGTTCGCTTATTTTGAGGAGAATGTTGGAATGAGCGGGCCTGTTATACCTCCAGAGAGGAAGCATACTTCCCTCCCAAGGTCTACGGTTACTTCAAGTACGACTGCTCCCAAGCTGCAGCAGTGCTTGGTGGCATTTGACAACAGACCGATTGTAGATAACGTGCCTCGTGGTGGTAGAGATGCGGATGCAACTGGAAACATTTTCAATGCTGCCTCTCGGCCACCACCAAGGATGCCCAAAGGAAGAGTTGTGGGCCCGGTTCTACCTTTGGAAGGTAATCGAGACATGAAAGATGCCTATGATCCAAGGGTAATGGTTAGAAACACTGTTGGTCTTTCACCACATTATGCATACAGAAGCAACAACGGGAATCAAACAAAGATACACGCAGCGGAATCTGATAAGGATTCGTCTTCTTTAATCAAACAACAAACAACGGTTGGGAAAATGTCGCCAGGGCTGGTCAACAGGAACCCATATTACAACCAACCACATGGTCAACCACCAAATGAACGGATAGCAATTGATGCTAAGTTTATGCAGGCCCAATCTCAATATGGTGTGGCGGGAGCAGCAGCAGTTGCTGTTGCTGCTCATAGAGAGGTTGGTGTTGTTCATATGGGAATTTCGTAG 1800 42.78 MQQQDRRKKSPKDIEFFTEYGEANRYKILEIIGKGSYGVVCAAIDTQTGEKVAIKKITNIFEHSSDAIRILREIKLLRLLRHPDIVEIKRIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTHEHHRFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKICDFGLARAAFTDTPTTIFWTDYVATRWYRAPELCGSFYSKYTPAVDIWGIGCIFAEVLTGKPLFPGKSVVHQLELITDLLGTPSPDTISRVRNDKARKYLTDMRRKKPVTFSEKFSNVDPLALGLLQRLLAFDPKDRPTAEQALADPYFKGLSKVEREPSCQPFSKLEFEFERRRVTKEDIRELIFREILEYHPQLLKDYMAGNDRTSFLYPSAIGQFRRQFAYFEENVGMSGPVIPPERKHTSLPRSTVTSSTTAPKLQQCLVAFDNRPIVDNVPRGGRDADATGNIFNAASRPPPRMPKGRVVGPVLPLEGNRDMKDAYDPRVMVRNTVGLSPHYAYRSNNGNQTKIHAAESDKDSSSLIKQQTTVGKMSPGLVNRNPYYNQPHGQPPNERIAIDAKFMQAQSQYGVAGAAAVAVAAHREVGVVHMGIS 599
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g01639 599 SMART serkin-6 26 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cind3g01639 599 ProSitePatterns Protein kinases ATP-binding region signature. 32 56 IPR017441 GO:0005524(InterPro)
Cind3g01639 599 FunFam Mitogen-activated protein kinase 112 340 - -
Cind3g01639 599 MobiDBLite consensus disorder prediction 444 479 - -
Cind3g01639 599 Gene3D Phosphorylase Kinase; domain 1 41 363 - -
Cind3g01639 599 FunFam Mitogen-activated protein kinase 15 120 - -
Cind3g01639 599 ProSiteProfiles Protein kinase domain profile. 26 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cind3g01639 599 Pfam Protein kinase domain 26 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cind3g01639 599 SUPERFAMILY Protein kinase-like (PK-like) 20 321 IPR011009 -
Cind3g01639 599 CDD STKc-TDY-MAPK 25 362 - -
Cind3g01639 599 ProSitePatterns MAP kinase signature. 61 164 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cind3g01639 599 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 23 358 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cind3g01639 599 Gene3D Transferase(Phosphotransferase) domain 1 112 340 - -
Cind3g01639 599 MobiDBLite consensus disorder prediction 403 422 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g01639 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr1:361491284 Cind3g01639 Cind-Chr3:331780400 dispersed
Cind Cind-Chr2:117586761 Cind3g01639 Cind-Chr3:331780400 dispersed
Cind Cind-Chr3:331780400 Cind8g01556 Cind-Chr8:32532908 dispersed
Cind Cind-Chr3:331780400 Cind3g01383 Cind-Chr3:43558124 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cind1g00275 . 199 263 MAP Kinase gene family AT3G18040 81.538 5.32e-32 121.0
Cind1g00599 ACH 22 311 MAP Kinase gene family AT5G19010 30.599 1.80e-30 124.0
Cind1g03262 . 1 575 MAP Kinase gene family AT3G14720 66.722 0.0 774.0
Cind1g04777 . 248 333 MAP Kinase gene family AT3G45640 66.279 9.65e-35 120.0
Cind1g04786 . 195 239 MAP Kinase gene family AT3G45640 86.667 1.33e-22 89.0
Cind1g07105 . 150 218 MAP Kinase gene family AT5G19010 72.464 1.10e-28 109.0
Cind2g00207 . 1 362 MAP Kinase gene family AT1G10210 83.702 0.0 660.0
Cind2g01298 . 3 555 MAP Kinase gene family AT1G73670 69.497 0.0 808.0
Cind2g03462 . 179 278 MAP Kinase gene family AT2G46070 60.0 9.82e-34 125.0
Cind2g04245 . 164 207 MAP Kinase gene family AT2G42880 56.818 1.11e-08 48.5
Cind2g04762 . 23 311 MAP Kinase gene family AT5G19010 29.874 2.22e-28 119.0
Cind2g04943 . 122 167 MAP Kinase gene family AT2G43790 89.13 7.16e-23 88.6
Cind2g05902 . 459 499 MAP Kinase gene family AT1G18150 58.537 6.19e-06 43.5
Cind2g06272 . 16 128 MAP Kinase gene family AT2G01450 30.769 5.81e-11 57.8
Cind3g00337 . 175 255 MAP Kinase gene family AT1G01560 62.963 5.55e-33 117.0
Cind3g00733 . 17 376 MAP Kinase gene family AT4G01370 76.944 0.0 593.0
Cind3g00738 . 2 370 MAP Kinase gene family AT3G45640 81.572 0.0 647.0
Cind3g00905 . 89 329 MAP Kinase gene family AT4G01370 33.058 2.26e-33 125.0
Cind3g01383 . 2 372 MAP Kinase gene family AT4G01370 86.436 0.0 685.0
Cind3g01639 . 2 598 MAP Kinase gene family AT3G14720 68.473 0.0 780.0
Cind3g01795 . 64 345 MAP Kinase gene family AT3G59790 35.959 8.07e-55 183.0
Cind3g02961 . 64 350 MAP Kinase gene family AT3G59790 34.694 6.88e-55 184.0
Cind3g03695 . 64 336 MAP Kinase gene family AT3G59790 35.714 8.61e-52 176.0
Cind3g05948 . 199 307 MAP Kinase gene family AT2G01450 72.477 2.31e-54 178.0
Cind4g01421 . 20 229 MAP Kinase gene family AT3G18040 34.071 2.91e-25 108.0
Cind4g02162 . 90 424 MAP Kinase gene family AT1G73670 37.901 8.24e-59 199.0
Cind4g03341 . 1 363 MAP Kinase gene family AT1G10210 84.848 0.0 664.0
Cind4g03559 . 196 314 MAP Kinase gene family AT2G01450 52.101 2.41e-34 124.0
Cind4g02840 . 24 343 MAP Kinase gene family AT4G36450 28.827 1.24e-28 117.0
Cind5g00169 . 97 268 MAP Kinase gene family AT4G01370 47.399 2.95e-48 160.0
Cind5g01893 . 1 394 MAP Kinase gene family AT2G43790 87.563 0.0 686.0
Cind5g03821 . 92 140 MAP Kinase gene family AT1G07880 69.388 1.45e-16 74.3
Cind5g04829 . 180 259 MAP Kinase gene family AT1G01560 63.75 1.06e-32 115.0
Cind5g05242 . 9 446 MAP Kinase gene family AT5G19010 67.352 0.0 580.0
Cind5g05277 . 230 269 MAP Kinase gene family AT4G01370 75.0 3.61e-14 67.0
Cind5g05397 . 12 372 MAP Kinase gene family AT4G01370 86.981 0.0 672.0
Cind5g05677 . 9 446 MAP Kinase gene family AT5G19010 75.799 0.0 685.0
Cind6g01023 . 3 370 MAP Kinase gene family AT3G45640 80.435 0.0 635.0
Cind6g01033 . 8 137 MAP Kinase gene family AT1G07880 65.385 1.87e-58 183.0
Cind7g02454 . 44 349 MAP Kinase gene family AT3G45640 34.395 3.68e-58 192.0
Cind7g05319 ACH 22 311 MAP Kinase gene family AT5G19010 31.546 2.28e-34 136.0
Cind8g01556 . 1 521 MAP Kinase gene family AT5G19010 80.488 0.0 880.0
Cind8g01559 . 9 446 MAP Kinase gene family AT5G19010 68.636 0.0 643.0
Cind8g01574 . 9 385 MAP Kinase gene family AT5G19010 68.602 0.0 537.0
Cind8g02099 ACH 246 319 MAP Kinase gene family AT5G19010 59.459 3.42e-23 97.8
Cind8g03431 . 63 369 MAP Kinase gene family AT3G59790 28.155 4.29e-33 124.0
Cind8g03433 . 46 341 MAP Kinase gene family AT4G01370 33.557 5.92e-49 169.0
Cind8g03437 . 46 330 MAP Kinase gene family AT4G01370 34.146 7.63e-50 168.0
Cind9g00468 . 79 573 MAP Kinase gene family AT1G73670 68.651 0.0 708.0
Cind9g00708 . 1 363 MAP Kinase gene family AT2G18170 83.471 0.0 648.0
Cind9g03037 . 216 258 MAP Kinase gene family AT4G11330 60.465 2.39e-10 53.5
Cind9g04102 . 148 258 MAP Kinase gene family AT1G01560 72.072 3.65e-50 164.0
Cind9g04169 . 64 367 MAP Kinase gene family AT3G59790 34.7 1.42e-57 191.0
Cind9g04227 . 198 302 MAP Kinase gene family AT2G01450 66.667 1.37e-44 155.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cind Pkinase 1.5e-65 CL0016 PK CMGC_MAPK