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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g01643 ATGGGTTCTTCCTCATCATCACAGAAACCAGAGTCTACTACTCAAGGGGGTGGAAACACCGATTTTAAATCTGTTAGTGATCAAGAATGGAAAAGTAAGCTTACCGGAGAACAGTTTTACGTAACTCGACAAAAGGGGACGGAAAGGGCCTTTACCGGGGAATACTGGAACACCAAAACTCCTGGGACTTACCATTGCATTTGTTGCGACACTCCACTATATGAGTCATCGACCAAGTTTGATAGTGGAACTGGTTGGCCATCGTACTATCAGCCGATAGGAGACAATGTGAAGACAAAGTTAGACCTATCTATCATTTTCATGCCTCGACAAGAAGTTGTATGTGCAGTTTGTGATGCTCATCTTGGTCATGTATTTGACGATGGTCCTCCACCTACTGGGAAGCGTCATTGCATCAATAGTGCTTCCCTCAAGTTGAAGCCAAAGTAG 450 44.22 MGSSSSSQKPESTTQGGGNTDFKSVSDQEWKSKLTGEQFYVTRQKGTERAFTGEYWNTKTPGTYHCICCDTPLYESSTKFDSGTGWPSYYQPIGDNVKTKLDLSIIFMPRQEVVCAVCDAHLGHVFDDGPPPTGKRHCINSASLKLKPK 149
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g01643 149 SUPERFAMILY Mss4-like 25 148 IPR011057 -
Cind3g01643 149 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 27 149 IPR002579 GO:0033743(InterPro)
Cind3g01643 149 NCBIfam peptide-methionine (R)-S-oxide reductase MsrB 25 148 IPR002579 GO:0033743(InterPro)
Cind3g01643 149 MobiDBLite consensus disorder prediction 1 29 - -
Cind3g01643 149 Pfam SelR domain 29 148 IPR002579 GO:0033743(InterPro)
Cind3g01643 149 PANTHER METHIONINE SULFOXIDE REDUCTASE 14 148 IPR028427 GO:0005737(PANTHER)|GO:0006979(InterPro)|GO:0016671(InterPro)|GO:0030091(InterPro)|GO:0033743(PANTHER)
Cind3g01643 149 FunFam Peptide methionine sulfoxide reductase MsrB 19 149 - -
Cind3g01643 149 Gene3D Peptide methionine sulfoxide reductase. 17 149 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g01643 K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:331530883 Cind3g02215 Cind-Chr3:378756859 dispersed