AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g01678 ATGAGTGGCGCGTGTCCGTCACCTGATCCTAGACTGAACTACCGTCCCGTAATTGGGATAGTGAGTCATCCAGGTGATGGTGCATCGGGTAGGCTTAGTAATGCGACCAATGCGTCGTATATTGCGGCTTCGTATGTTAAGTTTGTGGAGTCTGCTGGTGCTAGAGTTGTTCCGATTATTTATAATCAACCAATGGAGATTATACAAGCAAAACTCAATCTAGTCAACGGAGTGCTTTTTACAGGTGGATGGTCTAAGAGTGGCCTCTACTTTGATGTCATTGAGGAAGTTTTTAATCAAGTCCTGAAGAAGAATGACGCTGGTGAACATTTCCCATTGCTTGCTATATGCTTAGGGTTTGAACTCGTAACGATGATTGTTAGCAAAAACAATAACATCCTTGAAGCCTTTAGTGCATCAGATCAAGCATCCACACTGCAATTCATGAACAACATTAATATTGAAGAGACTGTGTTTCAAAGATTTCCTCCCGAGTTGGTTGTCAAGTTGAGTACAGAATGCCTTGTGATGCAAAACCATAAATACGGAATATCGCCTGAAACATTTCAAAAGACCAAGGAACTATGCAGTTTCTTTAAGGTCATAACAACTAGTACCGACGAAAATAACAAGGTATATGTATCAACAGCTCAATCCGAGAGGTATCCCGTGACTGCTGTCCAGTGGCATCCAGAGAAAAATGCATTTGAGTGGGGCTCGTCGGTGATTCCACATTCAGATAATGCAATTCAAGTGACTCAACATGTTGCAAACTATTTCGTGAGCGAGGCTAGGAAATCCTTCAACAGACCGCCTAATGATGAAGTGCTAAAAAATCTTATTTACAATTACAGCCCCACTTATTGCGGGACGGCTGGGAAAGGATACGATGAGGTTTACATCTTCACCGAGAATGAAAAGATGGCTCGACTTTAA 936 42.09 MSGACPSPDPRLNYRPVIGIVSHPGDGASGRLSNATNASYIAASYVKFVESAGARVVPIIYNQPMEIIQAKLNLVNGVLFTGGWSKSGLYFDVIEEVFNQVLKKNDAGEHFPLLAICLGFELVTMIVSKNNNILEAFSASDQASTLQFMNNINIEETVFQRFPPELVVKLSTECLVMQNHKYGISPETFQKTKELCSFFKVITTSTDENNKVYVSTAQSERYPVTAVQWHPEKNAFEWGSSVIPHSDNAIQVTQHVANYFVSEARKSFNRPPNDEVLKNLIYNYSPTYCGTAGKGYDEVYIFTENEKMARL 311
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g01678 311 SUPERFAMILY Class I glutamine amidotransferase-like 37 302 IPR029062 -
Cind3g01678 311 Pfam Peptidase C26 16 232 IPR011697 GO:0016787(InterPro)
Cind3g01678 311 Gene3D - 12 303 IPR029062 -
Cind3g01678 311 FunFam Folate gamma-glutamyl hydrolase 12 303 - -
Cind3g01678 311 ProSiteProfiles Gamma-glutamyl hydrolase domain profile. 7 303 IPR015527 GO:0008242(InterPro)
Cind3g01678 311 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 31 270 - -
Cind3g01678 311 PANTHER PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE 2 303 IPR015527 GO:0005773(PANTHER)|GO:0008242(InterPro)|GO:0034722(PANTHER)|GO:0046900(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g01678 K01307 gamma-glutamyl hydrolase [EC:3.4.19.9]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr6:272858551 Cind3g01678 Cind-Chr3:329119575 transposed
Cind Cind-Chr1:362057978 Cind3g01678 Cind-Chr3:329119575 wgd