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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g01680 ATGGGTTGTTCTGGATCGTCGCTAAATAAGCAAGACCGAACAGCAAAAAAGATAAGGAAGCCAAAGCCATGGAAGTTTCCACGGCCAGTTACATGGAACCAGTTGGTCCAGATGCGTGATGAGTTCTGGGATACAGCTCCTCACCATGGCGGCAAGAAAGAAATATGGGATGCAATACATGCAGCAGCAGAGGCTGATATAGAGCTTGCTCAAGCAATTTTGGACAGTGCAGGAGTTATTCTTCACAAACCTGATATGACAGTTTGTTGTGATGAAAGAGGTACCAAATATGAAATACCTAGGTATGTGTTGAGCGAGCCAACAAACTTAATACAATTAAGTTGA 345 43.19 MGCSGSSLNKQDRTAKKIRKPKPWKFPRPVTWNQLVQMRDEFWDTAPHHGGKKEIWDAIHAAAEADIELAQAILDSAGVILHKPDMTVCCDERGTKYEIPRYVLSEPTNLIQLS 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g01680 114 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 1 111 IPR039869 -
Cind3g01680 114 MobiDBLite consensus disorder prediction 1 25 - -
Cind3g01680 114 Pfam Ubiquitin-binding domain 15 112 IPR032752 -
Cind3g01680 114 Gene3D - 31 104 IPR038169 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g01680 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:329110632 Cind3g01811 Cind-Chr3:17664995 dispersed
Cind Cind-Chr3:329110632 Cind6g02592 Cind-Chr6:140158831 transposed