AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g01682 ATGGAACAACCACTTAATCAATCAGCTCTAGCTCTTGCCCCAAACAAGAGCAGATTAGCCCGAACTTTCGCGAAAGTCTTGCATACTCGAGCTGCAACAAGGGCTGCAACTCTTGACAAAACTCGAAAAACAAAGTCAAGTGAAAAAACCAAACATGACATTGACCATGAGAAGATTAGAAACCAAGCTGCAATGGATGCGTTTATCGCCAAAGTGTTTGCTACTATCTCATCAGTTAAAGCTGCATATGCTCAGTTGCAATATGCTCAGTCTCCTTATGATCCTGATGGTATTCAGTCAGCTGATCAGATCATGGTATCTGAACTCAAAACGTTATCTGAATTCAAACAGTTATTCATCAAGAAACATCTTGACAGCAACGAAAAAGCCCCTGAAACCATTCAGCTACAAGCAGAAATCCAAGAACAGAAAAACCTGTTACAAATGTATGAAATAACCACGAAAACATTAGACAGCCAGAAGAAGCTCAAAGATTCAGAGATCATTTTCTTAAAAGAAAAACTCGAAGAAGCGAATAAAGAAAATAAGATTACTGAAAGAAGGTTAAACTCTAGTGGACCGTTTTCGCCTCAGGAGAAACTTAGCTTATTGTCATTAAGTCCAAAAAGTTTCGTATTGTGTCTTCAGCAAACGAGGAAGTCTGTTACTAGTTTTGTGAAGTTGATGATGAGTGAAATGGAAGAAGCGAATTGGGATTTAAATGCAGCTGCTAGTTCCATCCAACCAGATGTTATATATCGGGACACTACTCATATATGTTACGCATTCGAGTCTTTTGTTTATCAGGTTATGTTCGATGGGTTCAACGAGTCAAATGTCTCGAGTTCAAGTCAATATTTTTTAGACAAGTTTATGGAGTTAAAGTCTATAAAAGCAAGTGAATACCTTAAATGGAAACCTAGCTCGACATTTGCTAGATTTTGTTACTCTAAGTATTTACGACTCGTTCACCCGATAATGGAATTCGCTCTTTTCGGGAACTTGAACCAAAGGAACCTAGTGGGTGCCGAAAAAACCCCGGAAACAGCCTTTTTTAACTCGTTTGCTGAAATGGCTAAGCGCGTTTACCTCCTACATTGTCTAGCATTCGCATTTGATCCAAGCAAGGCCTCGGTCTTTCAAGTCCAAAAAGGGAGCCGGTTTTCGGAAGTGTACATGGAAAGTGTGAATGAAGAACCGGTAAAAAGCTCTCCAGAAGTGAGTTTTACTGTGGTTCCAGGGTTTAAAATGGGTAAAACTGTTATACAGTGTCAAGTGTATTTGACTTGA 1290 39.3 MEQPLNQSALALAPNKSRLARTFAKVLHTRAATRAATLDKTRKTKSSEKTKHDIDHEKIRNQAAMDAFIAKVFATISSVKAAYAQLQYAQSPYDPDGIQSADQIMVSELKTLSEFKQLFIKKHLDSNEKAPETIQLQAEIQEQKNLLQMYEITTKTLDSQKKLKDSEIIFLKEKLEEANKENKITERRLNSSGPFSPQEKLSLLSLSPKSFVLCLQQTRKSVTSFVKLMMSEMEEANWDLNAAASSIQPDVIYRDTTHICYAFESFVYQVMFDGFNESNVSSSSQYFLDKFMELKSIKASEYLKWKPSSTFARFCYSKYLRLVHPIMEFALFGNLNQRNLVGAEKTPETAFFNSFAEMAKRVYLLHCLAFAFDPSKASVFQVQKGSRFSEVYMESVNEEPVKSSPEVSFTVVPGFKMGKTVIQCQVYLT 429
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g01682 429 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 17 428 IPR040225 GO:0009639(InterPro)|GO:0009959(InterPro)
Cind3g01682 429 Pfam Plant protein of unknown function (DUF641) 61 188 IPR006943 -
Cind3g01682 429 Coils Coil 161 188 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g01682 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:328985209 Cind6g02451 Cind-Chr6:131520155 dispersed
Cind Cind-Chr3:55592164 Cind3g01682 Cind-Chr3:328985209 transposed
Cind Cind-Chr1:363132777 Cind3g01682 Cind-Chr3:328985209 wgd
Cind Cind-Chr3:328985209 Cind8g00181 Cind-Chr8:253782188 wgd