AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cind3g01698 | ATGATACAAGTAGCTATGGCTACTTCTTCGCTCTCGTTTATTCTCTTATCTTTATTCATATCATTCTCAATAACGAATGCCATTGTTCCTTCGAATGAGACCTTCCGATATGTCAACGAAGGTGATTTTGGAGAATTCCAACTTGAGTCTGAATACACCCCAACCTATCGTCCCCTTGATCCATTTACCTCCCCTTTTCAACTTTGTTTCTACAACACCACCCCAAATGCCTATTATCTTGGTCTTCGTATGGGGACTAGACGTGATGGATCTCTCATGCGATGGGTCTGGGAAGCCAACCGTGGCTCCCCAGTACGAGAAAATGCCACGTTTTCATTAGGTTCCGATGGAAACCTAATTTTGGCTGAATCAACAGGCCAGGTCGTATGGCAAACCAACACCGCCAATAAAGGCGTTGTTGGTTTTGCCATAGAGTCAGATGAAACCGACTATGAAGAGAACAATTTTCACGTACTTTGGTGTCGTCTAGAGAACGCTCGAGACTTTGAGCAACCGTATTTGTCGTTGGGAACGATTCGATACAATAGCTCGTTATCGTATCTTCGACTAGGCATCGATGGGAACCTAAGACTCTACACGTATCGAGCAAATGTGCGGGGAAACGCGTGGGCGTTATTGTTCAGTTTGTTTGATAGAGGTGTAAGAACCAGTAGCGGGTCAGATGATCCGGTAGACGAATGTCAATTACCAAGTCGATGCGGAAAATTTGGGCTTTGCGAGGAAAGCCAGTGTGTTGGGTGTCCTACCCCCAACGGTGTGTTTGCGTGGAGCAAGGATTGCGATGTGAAGTTGCCTAGCTGTAATGCGAGTAGTTTCAAATATTACGAGCTTAAAGGGGTTGATCATTTCACGGTTAAGTATACATCCGGGACTAAATCTAGCTTGGATAGTTGCAAGAACAAATGCACGAAGGATTTGCTGGTGCTTGAATTTTCATGGTCGAGTGACGGTTGTGTCAGTGAAGAACTTTCAGTTAGTGGCAACATTGGATCAGAGCAAGCCAGGAGGAAAGGGGATGGAGAAACAGTTTTGCTCCAGTTTGGAAAAGTTGGTGACAATGTGTTCACTATGGACTACAGACGGCCACTGTCGGCATTCCAAGCCTTTGCCATTTCCCTAACGAGTTTTGGGACAAAGCTTGCATGTGAATGA | 1173 | 45.27 | MIQVAMATSSLSFILLSLFISFSITNAIVPSNETFRYVNEGDFGEFQLESEYTPTYRPLDPFTSPFQLCFYNTTPNAYYLGLRMGTRRDGSLMRWVWEANRGSPVRENATFSLGSDGNLILAESTGQVVWQTNTANKGVVGFAIESDETDYEENNFHVLWCRLENARDFEQPYLSLGTIRYNSSLSYLRLGIDGNLRLYTYRANVRGNAWALLFSLFDRGVRTSSGSDDPVDECQLPSRCGKFGLCEESQCVGCPTPNGVFAWSKDCDVKLPSCNASSFKYYELKGVDHFTVKYTSGTKSSLDSCKNKCTKDLLVLEFSWSSDGCVSEELSVSGNIGSEQARRKGDGETVLLQFGKVGDNVFTMDYRRPLSAFQAFAISLTSFGTKLACE | 390 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cind3g01698 | 390 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 75 | 199 | IPR036426 | - | |
| Cind3g01698 | 390 | ProSitePatterns | Tub family signature 2. | 375 | 390 | IPR018066 | - | |
| Cind3g01698 | 390 | SMART | blect-4 | 50 | 158 | IPR001480 | - | |
| Cind3g01698 | 390 | Pfam | Tub family | 344 | 385 | IPR000007 | - | |
| Cind3g01698 | 390 | SUPERFAMILY | Tubby C-terminal domain-like | 343 | 390 | IPR025659 | - | |
| Cind3g01698 | 390 | PANTHER | G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 | 181 | 329 | IPR051343 | - | |
| Cind3g01698 | 390 | Gene3D | Tubby Protein; Chain A | 332 | 390 | IPR025659 | - | |
| Cind3g01698 | 390 | ProSiteProfiles | Bulb-type lectin domain profile. | 47 | 171 | IPR001480 | - | |
| Cind3g01698 | 390 | CDD | B-lectin | 50 | 142 | IPR001480 | - | |
| Cind3g01698 | 390 | Gene3D | - | 62 | 213 | IPR036426 | - | |
| Cind3g01698 | 390 | PRINTS | Tubby superfamily signature | 201 | 225 | IPR000007 | - | |
| Cind3g01698 | 390 | PRINTS | Tubby superfamily signature | 368 | 390 | IPR000007 | - | |
| Cind3g01698 | 390 | PRINTS | Tubby superfamily signature | 347 | 366 | IPR000007 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cind3g01698 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cind | Cind-Chr3:328010791 | Cind3g01700 | Cind-Chr3:327919534 | dispersed | |
| Cind | Cind-Chr3:328010791 | Cind3g01695 | Cind-Chr3:328316457 | proximal | |
| Cind | Cind-Chr3:328010791 | Cind3g01697 | Cind-Chr3:328088416 | tandem | |
| Cind | Cind-Chr3:327973539 | Cind3g01698 | Cind-Chr3:328010791 | tandem | |
| Cind | Cind-Chr3:331119968 | Cind3g01698 | Cind-Chr3:328010791 | transposed | |
| Cind | Cind-Chr3:328010791 | Cind8g00188 | Cind-Chr8:254031923 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cind1g03235 | ACH | 45 | 278 | TUB Transcription Factor family | AT2G47900 | 67.949 | 8.12e-115 | 334.0 | |
| Cind1g03820 | . | 20 | 427 | TUB Transcription Factor family | AT1G25280 | 71.014 | 6.22e-180 | 547.0 | |
| Cind1g06957 | . | 42 | 413 | TUB Transcription Factor family | AT1G47270 | 57.937 | 9.40e-150 | 427.0 | |
| Cind1g07181 | . | 42 | 413 | TUB Transcription Factor family | AT1G47270 | 51.323 | 2.60e-122 | 356.0 | |
| Cind2g01886 | . | 76 | 413 | TUB Transcription Factor family | AT1G47270 | 56.818 | 1.38e-130 | 377.0 | |
| Cind2g01970 | . | 128 | 198 | TUB Transcription Factor family | AT1G47270 | 64.789 | 1.69e-28 | 105.0 | |
| Cind2g03347 | . | 39 | 247 | TUB Transcription Factor family | AT2G47900 | 52.582 | 9.07e-68 | 214.0 | |
| Cind3g01695 | ACH | 10 | 379 | TUB Transcription Factor family | AT1G53320 | 68.649 | 0.0 | 507.0 | |
| Cind3g01698 | . | 317 | 379 | TUB Transcription Factor family | AT1G53320 | 68.254 | 1.66e-20 | 90.5 | |
| Cind3g01898 | ACH | 1 | 445 | TUB Transcription Factor family | AT1G25280 | 71.678 | 0.0 | 618.0 | |
| Cind4g05282 | . | 8 | 397 | TUB Transcription Factor family | AT1G16070 | 52.041 | 2.09e-140 | 404.0 | |
| Cind6g04214 | . | 17 | 115 | TUB Transcription Factor family | AT2G18280 | 52.381 | 4.58e-25 | 100.0 | |
| Cind6g04277 | . | 1 | 445 | TUB Transcription Factor family | AT1G25280 | 67.411 | 0.0 | 563.0 | |
| Cind7g01019 | . | 1 | 393 | TUB Transcription Factor family | AT2G18280 | 60.945 | 1.03e-176 | 496.0 | |
| Cind7g04854 | . | 1 | 393 | TUB Transcription Factor family | AT2G18280 | 60.891 | 1.17e-175 | 493.0 | |
| Cind8g00188 | ACH | 44 | 379 | TUB Transcription Factor family | AT1G53320 | 71.81 | 1.49e-176 | 494.0 | |
| Cind8g00283 | ACH | 1 | 445 | TUB Transcription Factor family | AT1G25280 | 73.673 | 0.0 | 628.0 | |
| Cind8g02665 | . | 128 | 198 | TUB Transcription Factor family | AT1G47270 | 63.38 | 4.54e-28 | 103.0 | |
| Cind8g02704 | . | 1 | 366 | TUB Transcription Factor family | AT2G47900 | 75.204 | 0.0 | 532.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Cind | Tub | 1.3e-16 | CL0395 | TF | TUB |