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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cind3g02004 ATGCCACTCGAATATGACATTACTTCGTGGAAGACTTCATTTTTCCCTGAGAGATTTGGGGTTTCAGAGATGGTGGTTCCAACTTCACCCACTGGATTCAGTAGCATTCCTGTTGGAAATGATTATCAAAAGGTTGAAAACGACGAATATTTTTGTAGTAAGGGTGGCTACGGCACAAACTCATGTTGGTCCTATCAAACTACTGCAACTAATAATTGGGAAACCGAGAACCAGAAAACAAGTAAAGAAATCGAAGAACCAACATTAAAGATTGGGAGGTATTCAGTGGAAGAAAGGAAAGACAAGATCATGAGGTATCTGAAGAAGAGAAACCAAAGGAACTTCAATAAGACCATTAAGTACGAATGCCGAAAGACATTAGCAGACAAGCGAATACGAGTTCGAGGGAGGTTTGCGAAGAACAATAATGATAATCATCATCATCATGACCATCACGATCATCAACCTTGTGAAGATCAAGTGCTGCCTAACTTCAATATTGCCGATAATCCTTTTGAGGAAGACATTCAACAGCTATACACCAACAATTTTCTGATGAAGCAGGATTATGATGAAGAAGAAGAATGGCTGCAAGAAGCGATGGCTAGTTTATTGTATTCACCACAGATTAACTAG 636 39.31 MPLEYDITSWKTSFFPERFGVSEMVVPTSPTGFSSIPVGNDYQKVENDEYFCSKGGYGTNSCWSYQTTATNNWETENQKTSKEIEEPTLKIGRYSVEERKDKIMRYLKKRNQRNFNKTIKYECRKTLADKRIRVRGRFAKNNNDNHHHHDHHDHQPCEDQVLPNFNIADNPFEEDIQQLYTNNFLMKQDYDEEEEWLQEAMASLLYSPQIN 211
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cind3g02004 211 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 64 201 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Cind3g02004 211 Pfam CCT motif 99 141 IPR010402 GO:0005515(InterPro)
Cind3g02004 211 MobiDBLite consensus disorder prediction 140 158 - -
Cind3g02004 211 ProSiteProfiles CCT domain profile. 99 141 IPR010402 GO:0005515(InterPro)
Cind3g02004 211 MobiDBLite consensus disorder prediction 140 161 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cind3g02004 K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cind Cind-Chr3:308767134 Cind5g02975 Cind-Chr5:75645474 dispersed
Cind Cind-Chr3:308767134 Cind1g02465 Cind-Chr1:206779619 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cind1g02465 ACH 284 329 C2C2-CO-like Transcription Factor family AT5G57660 52.174 9.59e-11 60.5
Cind1g03256 ACH 1 278 C2C2-CO-like Transcription Factor family AT1G78600 53.147 2.08e-90 269.0
Cind1g03343 . 1 289 C2C2-CO-like Transcription Factor family AT5G48250 47.855 2.55e-71 242.0
Cind1g04314 . 334 388 C2C2-CO-like Transcription Factor family AT5G24930 47.273 5.75e-11 62.0
Cind1g05641 . 1 110 C2C2-CO-like Transcription Factor family AT4G27310 53.636 1.57e-31 112.0
Cind1g05643 . 1 104 C2C2-CO-like Transcription Factor family AT4G27310 50.962 1.94e-25 100.0
Cind1g05806 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 6.56e-10 57.0
Cind2g00242 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 41.926 1.14e-75 233.0
Cind2g00556 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 59.624 8.49e-84 244.0
Cind2g01141 . 40 303 C2C2-CO-like Transcription Factor family AT1G68190 33.754 1.47e-42 150.0
Cind2g02619 . 73 319 C2C2-CO-like Transcription Factor family AT3G02380 28.053 9.17e-20 87.0
Cind2g03106 . 4 166 C2C2-CO-like Transcription Factor family AT5G54470 42.857 4.57e-27 104.0
Cind2g05143 . 5 221 C2C2-CO-like Transcription Factor family AT3G21150 28.755 2.11e-17 76.3
Cind3g00363 . 1 196 C2C2-CO-like Transcription Factor family AT1G75540 54.0 3.40e-63 196.0
Cind3g00708 . 71 193 C2C2-CO-like Transcription Factor family AT1G78600 39.683 1.37e-18 77.4
Cind3g01664 ACH 1 298 C2C2-CO-like Transcription Factor family AT1G78600 50.0 1.05e-82 248.0
Cind3g02004 . 338 385 C2C2-CO-like Transcription Factor family AT5G24930 50.0 2.44e-09 54.3
Cind3g02780 . 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.398 3.19e-129 375.0
Cind3g04377 . 86 406 C2C2-CO-like Transcription Factor family AT5G24930 35.398 1.99e-56 185.0
Cind3g05498 . 59 118 C2C2-CO-like Transcription Factor family AT1G78600 51.667 1.70e-13 61.2
Cind4g01240 ACH 286 331 C2C2-CO-like Transcription Factor family AT5G15850 52.174 1.41e-09 53.9
Cind4g03363 . 1 322 C2C2-CO-like Transcription Factor family AT1G75540 41.543 2.60e-66 209.0
Cind4g05680 . 1 347 C2C2-CO-like Transcription Factor family AT3G02380 52.073 2.67e-118 345.0
Cind5g02975 ACH 223 276 C2C2-CO-like Transcription Factor family AT2G24790 50.0 7.98e-12 59.3
Cind6g01248 . 8 302 C2C2-CO-like Transcription Factor family AT2G47890 42.566 2.89e-73 228.0
Cind6g03474 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 39.535 6.36e-11 59.3
Cind7g00982 . 315 386 C2C2-CO-like Transcription Factor family AT5G24930 43.836 9.12e-12 63.9
Cind7g03591 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 2.29e-10 58.5
Cind7g04362 . 9 347 C2C2-CO-like Transcription Factor family AT3G02380 50.667 1.78e-117 343.0
Cind8g00145 . 1 224 C2C2-CO-like Transcription Factor family AT1G75540 50.885 3.07e-64 202.0
Cind8g00173 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.09 1.22e-95 282.0
Cind8g02168 . 1 372 C2C2-CO-like Transcription Factor family AT3G07650 54.233 1.40e-133 384.0
Cind8g03548 . 235 336 C2C2-CO-like Transcription Factor family AT5G48250 51.961 5.18e-25 99.4
Cind8g03631 . 72 193 C2C2-CO-like Transcription Factor family AT1G78600 40.476 5.92e-18 76.3
Cind9g00750 . 4 97 C2C2-CO-like Transcription Factor family AT5G54470 55.67 2.04e-31 112.0
Cind9g01116 . 62 128 C2C2-CO-like Transcription Factor family AT1G78600 47.761 1.44e-13 62.0
Cind9g03654 . 8 401 C2C2-CO-like Transcription Factor family AT2G33500 39.278 6.59e-73 233.0
Cind9g04250 . 278 399 C2C2-CO-like Transcription Factor family AT1G68520 39.583 1.19e-20 90.5
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cind CCT 3.9e-18 CL0281 TR Others